Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1516 ATGGCGGACTCTGACAACGACTCCGGCGGACCACACGGCGGAGGATCAAACGCTCACGGAAGCGAGATGTCACCACGAGAACAAGACCGATTTCTTCCAATAGCAAACGTAAGCAGGATCATGAAAAAAGCACTACCAGCGAACGCGAAGATCTCAAAAGACGCAAAGGAAACAGTTCAAGAGTGTGTTTCAGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGATAAGTGTCAACGTGAGAAGCGGAAGACGATCAACGGCGATGATTTGCTTTGGGCGATGACGACGTTGGGATTCGAGGAGTATGTTGAGCCGTTGAAAGGTTATCTTCAACGGTTTAGGGAGATGGAAGGTGAGAAGACCGTGGGGGCGCGTGATAAAGACGCGCCCCAAGGTTCTGGTAGTGTTACTAATAGTTCTTATGAGAGTGGTGGTTATGGTGGTGGTGGTGGTGTTATGATGCATCAGGGACACGTGTATGGTTCTGGTGGTGGTGGGTTTCATCAAGTTATGGGTAAGGGTGGGCCCGGGTATCCTGGGCCTGGGTCTAATACTGGTAGGCCCAGATAG 573 0.5131 MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVGARDKDAPQGSGSVTNSSYESGGYGGGGGVMMHQGHVYGSGGGGFHQVMGKGGPGYPGPGSNTGRPR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1516 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 160 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr3g1516 190 MobiDBLite consensus disorder prediction 165 190 - -
Mtr3g1516 190 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 160 - -
Mtr3g1516 190 Gene3D Histone, subunit A 18 143 IPR009072 GO:0046982
Mtr3g1516 190 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Mtr3g1516 190 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Mtr3g1516 190 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Mtr3g1516 190 MobiDBLite consensus disorder prediction 121 149 - -
Mtr3g1516 190 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr3g1516 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Mtr3g1516 190 SUPERFAMILY Histone-fold 28 128 IPR009072 GO:0046982
Mtr3g1516 190 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1516 Mtr-Chr3 26874213 26876012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1516 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.400 2.47e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr3g1516 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1516 K08065 - gmx:100813580 263.462