Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1506 ATGAGCAGTGCCTTTTCCTCTATAGTTTCTTCTGATGTGGTGCCTCAGAAAAAATATGACGTTTTTCTTAGCTTTCGAGGTGAGGATACTCGCAGAAACTTCACTAGCCATCTTTATGATGCTTTGAGCCGAAAGAAAGTTGAAACATTTATAGACAACAATGAGCTTCGAAAAGGAGATGAGATCTCGGCAGCACTCATCAAAGCCATTGAGGAGTCACATGCATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTGAATGAGCTCAAAAAGATTCTTGAATGCAAGAAATATATGCAACAGATTGTGATACCAGTTTTTTACAACATAGATCCATCACATGTGAGGAAGCAGACCGGGAGTTACAAGCAAGCCTTTGCAAAACATAAGCAAGATTTGAAGCACAATAATGACAAGTTGAAGAAATGGAAAGATTCTCTCACCGAGGCAGCTAATTTGGTTGGTTGGGACTCTCGAAATTATAGGAGTGAACCAGACTTCATTAAAGACATTGTTGAAGATGTTTTGCGGAAACTGAATATTAGGTACCCATATGAAATTAAGGGGCTTGTTGGAATTGAGAAAAATTACGAACAAATTGAATCAATGCTGAAAATTGGGTCAAATGAAGTCAGAGTACTTGGAATATGGGGCATGGGTGGGATAGGAAAGACCACCCTTGCTAAGACATTATATGCTAAACATTTTTCCCAATTCGAAGGTCGTTGCGTCCTCAATGTAATGGATGAATCAAACAAGTATGGACTCAATGTTCTACACAATAAACTTCTGTCTTCATTGTTAGAGGAAGAAAATATTCATCCTGATGCATCCTACATAGAAGCCCCTTTCTCCGAGAGAAGGATTGGGCGTAAAAAAGTTTTAATTGTTTTGGATGGTGTAGAAACCTTAGAACAAATAGAAGATCTTATCCTAAAAATTGATGGTCTAGGACCAGGTAGTAGGGTCATTATTACAACTAGAGATAAGCAGATATTTAGTCAGTTGAGTAAATGTGAAATATATGAGGTTAAGGAATTAGAGAAGCCTGATTCTCTTCAGCTATTCAGTTTGATTGCCTTCAAAGAAAAACATCCTAAAACTGGATATGAAGATCTATCAGATAGTGTAATTGCCTATTGCAAAGGTAACCCTCTGGCTTTAAAAGTTTTAGGTGCAAATCTCAGTTCAAGGGGCCGAGAAGCATGGGAAAATGAACTGAAAAAGCTCCAAAAGATTCCCAATCGAAAGATTTATGATGTGTTAAAATTGAGTTATGATGATTTAGATCATTGTCAGAAGGCCATATTTCTAGACATCGCATGCTTGTTGAATGGAAAAGATAAAACTTTTGTAAGAGATCTATTGGAAGCTTGTGAGTTCTTTGCAATAAGTGGGATAGAAGTCCTTCTAGATAAGGCTCTCATTCAACTAGGTTCAATTTTGCATGTCAAATGGGAAGTTTGTATTATAGAAATGCATGATTTGTTACAAGAAATGGGACGGGAAATTGTTAATCAAGAATCTGAAGACCCTGGAAAACGAAGTCGACTGTGGAAAGCTGATGAGATATCTGATGTATTTCTGATGTATTGA 1611 0.3718 MSSAFSSIVSSDVVPQKKYDVFLSFRGEDTRRNFTSHLYDALSRKKVETFIDNNELRKGDEISAALIKAIEESHASIVIFSENYASSKWCLNELKKILECKKYMQQIVIPVFYNIDPSHVRKQTGSYKQAFAKHKQDLKHNNDKLKKWKDSLTEAANLVGWDSRNYRSEPDFIKDIVEDVLRKLNIRYPYEIKGLVGIEKNYEQIESMLKIGSNEVRVLGIWGMGGIGKTTLAKTLYAKHFSQFEGRCVLNVMDESNKYGLNVLHNKLLSSLLEEENIHPDASYIEAPFSERRIGRKKVLIVLDGVETLEQIEDLILKIDGLGPGSRVIITTRDKQIFSQLSKCEIYEVKELEKPDSLQLFSLIAFKEKHPKTGYEDLSDSVIAYCKGNPLALKVLGANLSSRGREAWENELKKLQKIPNRKIYDVLKLSYDDLDHCQKAIFLDIACLLNGKDKTFVRDLLEACEFFAISGIEVLLDKALIQLGSILHVKWEVCIIEMHDLLQEMGREIVNQESEDPGKRSRLWKADEISDVFLMY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1506 536 Pfam NB-ARC domain 199 421 IPR002182 GO:0043531
Mtr3g1506 536 Gene3D - 16 183 IPR035897 -
Mtr3g1506 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Mtr3g1506 536 PRINTS Disease resistance protein signature 218 233 - -
Mtr3g1506 536 PRINTS Disease resistance protein signature 293 307 - -
Mtr3g1506 536 PRINTS Disease resistance protein signature 386 400 - -
Mtr3g1506 536 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 533 - -
Mtr3g1506 536 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Mtr3g1506 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 533 IPR044974 GO:0006952
Mtr3g1506 536 Gene3D - 184 348 IPR027417 -
Mtr3g1506 536 Gene3D - 351 435 IPR042197 -
Mtr3g1506 536 SUPERFAMILY "Winged helix" DNA-binding domain 422 531 IPR036390 -
Mtr3g1506 536 SMART till_3 18 158 IPR000157 GO:0007165
Mtr3g1506 536 Pfam TIR domain 18 189 IPR000157 GO:0007165
Mtr3g1506 536 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1506 Mtr-Chr3 26752502 26755116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1506 17 534 WRKY Transcription Factor Family AT4G12020 31.286 2.01e-62 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1506 - - mtr:MTR_3g058790 1035.02