LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g1501	ATGAGCAGTGCTATTTCCTCTATAGTTTCTTCTGATGTGGTGCCTCAGAAAAAATATGACATTTTTCTTAGCTTTCGAGGTGAGGATACTCGCAGAAACTTAACAAGCCATCTTTATGATGCTCTGAGCCGAAAGAAAATTGAAACCTTTATGGACAACAATGAGCTTCAAAAAGGAGATGAGATCTCGGCAGCACTCATCAAAGCCATTGAGGAGTCACATGCATCTATTGTTATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTAAATGAGCTCAAAAAGATTCTTGAATGCAAGCAATATATGGAACAGATGGTGATACCTGTTTTTTACAACTTAGATCCAGCAAATGTGAGAAAGCAGACTGGAAGTTACGAGCAAGCCTTTGAAAAACATAAGCGAGATTTGAAGAGCAATAATGACAAGTTGAAGAACTGGAAAGCCGCTCTCACCGAGGCAGCTAATTTAGTTGGTTGGGACTCTCGAAATTATAGGAGTGAACCAGATTTCATTAAGGACATTGTTGAAGATGTTTTGCGGAAACTGAATCTTAGATACCCATATGAAATTAAGGGTCTTGTTGGAATTCAGAAGAATTATAAACAAATTGAATCAATGCTGAAAATTGGGTCACATGAAGTCAGAGTCCTTGGAATATGGGGCATGGGTGGCATAGGAAAGACCACCCTTGCTAGGGCTTTATATGCTAAAATGTATTCTCAATTCGAAGGTTGTTGCTTACTCAATGTAATGGATGAATCAAACAAGTATGGACAAAACGTTGTACACAATAAACTTTTGTCTTCATTGTTAGAGGAAGAAAATATTCATCCTGATGCATCCTACATAGAAGCCCCTTTCTCCGAGAGAAGGATTGGGCGTAAAAAAGTTTTAATTGTGTTGGATGGTGTAGAAACCTTAGAGCAAATAGAAGATCTTATCCCAAAAATTGATGGTCTGGGACCAGGTAGTAGGGTCATTATTACAACTAGAGATAAGCACATATTTAGTCAGTTGAGTAAATGTGAAATATATGAGGTTAAGGAATTAGAGAAGCCTGATTCTCTTCAGCTATTCAGTTTGACTGCCTTCAAAGAAAAACATCCAAAAACTGGATATGAAGATGTATCAGATAGTGTAATTGCCTATTGCAAAGGTAACCCTCTGGCTTTAAAAGTTTTAGGTGCAAATCTCAGTTCAAGGGGCCGAGAAGCATGGGAAAATGAACTGAAAAAGCTCCAAAAGATTCCCAATCAAAAGATTTATAATGTGTTAAAATTGAGTTATGATGACTTAGATCGTTGTCAAAAGGCCATATTTCTAGACATCGCATGCTTGTTGAGTGGACAGGGTAAAGATTTTGTCAGAGATCTATTGGAAGCTTCTGAGTTCTTTGCAATAAGTGGGATAGACGTCCTTCTAGATAAAGCTCTCATTCAACTAGATTCAATTTTGCATGTCAAAAGGGAAGTTTGTACTATAGAAATGCATGATTTGTTACAAGAAATGGGACGGGAGATTGTAAATCAAGAATCTGAAGATCCTGGAAAACGAAGTCGACTGTGGAAAGCTGAAGAGATATCTGATGTATTAAAAAATAACAAAGGAACTGAAGCTGTCGAAGCGATAACATTCGATAGTACAGATGTGGGGGATCTTTACTTGAAGTCTAATTCCTTTAGAAGGATGACAAATTTAAGATATCTTAAAATCTATAATAAATCTAGAGGAAACACGTGCAATGTGTACTTTCCCGATGGTCTTGAGTGGATTTCTGATAAATTGAGGTATCTTCGATGGGAAGGATACTGTCTTGAGTATTTGCCATCAACCTTTTGTGCTGAAATGCTCATAGAGCTTCACTTGAGTCATAGCAAGCTTAAAAAGCTATGGGATGGAGTTCAGAATCTTGTGAATCTAAACATACTTTGGCTTGAATCCTCCAAAAATCTGATTGAGATCCCAGACTTATCTAAGGCTACAAATCTTCATAGAGTATATCTTTTTCAATGTGAAAGCCTGGGTCAGCTCCATTCTTCGATCTTTTCTCTCCCTGATCTTAGATATCTAGATTTACGAGGTTGCAAAAAGATTGAAAGCCTTAAAACCAACATTCATTCAAAATCTCTTCGTGAACTCTTACTCGATGATTGTTATTCTCTCACAGAATTCTCAGTGACATCGGATGAAATGACAGAGTTGTCCTTAGGTGGCACTGCTATACGTGAATTGTCTTCATGGATTTGGCGTAATAGAAAACTTACTTCGCTTGGCCTATCTGAGTGTAACAAGCTTAACATTGTTGGGAATAAGTTAACAAATGATCATGGACTTGGGTCTGTTACTGAGCTAGACCTTTCAGGGTGCACAGAAATCAATGCATTAAGTCTGTGGTCCATCCTTGATGGCATACAATCTTTAAAACGGCTAACATTACATGAGTGTTGCAACTTGGAATGTCTCCCTGAGAATATCCGAAACCATTCAATGCTAAAATGGCTTGATTTAGATGGTTGCAGGAAACTTGTGTCTCTAACAGAACTTCCGGCATCCCTAATAACTTTGAGTGGCATTAATTGCACTTATCTGGAAACAGACTCCACTCAACGGTCATTTCTTGAGAACATGGTACAAATTTTCTCTAAAGACCCTTTTCATGTAAATAAAGATGCCAATTACCTTTTCTGGCCAGGAGCACAAGTTCCTTGCAAGTTTGATTTTCAAACAATGAAGGCTTCAATAACCATTCCTCCTATTCCAAAATATAACCTGTCTGGTTTCATATTCTGCACCATTCTTTCTGAGGGCTTCCTTTTTCAGAGTCACCCCCTGCATTGTATCATCTTAGAACACGGCAAAGAAGTCGACAGGTGTATTATTTGTTTTGCCCTTTATATTGTGAGATTAATTTCAGATCATGTATTGTTAAGTTGGTATTGTTACAAAAGAGAAAAATTTGGAAGTAATGATTGTAAACTATCATTTCAATTCATACATAACGTAGAATTGGGGTGGTCAACGGAGGGGATCAAAGGGTGTGGGATCTTACCTGTATATAACTTAGAACATAAGTCGGATCTGGCTGGTAGGGAAATTGGTAAATTAAAATTCAGTAATCAATATTCTGACAGGTCTAATTGGTCTAACAATGAAATTGAAGATGGCCAGGAAAATTATAATGATGAGTTACAGCCTTCAGCAATTGGAGGTGAAGTCATAAGCTCCAACATTGAAAATGAAGATGACCAGAAACATCCTTGCTGTTCAATCGGTCTTTATTTGAGGCACTTGCTAAGAGGGTCAAAAGAATAA	3318	0.3755	MSSAISSIVSSDVVPQKKYDIFLSFRGEDTRRNLTSHLYDALSRKKIETFMDNNELQKGDEISAALIKAIEESHASIVIFSENYASSKWCLNELKKILECKQYMEQMVIPVFYNLDPANVRKQTGSYEQAFEKHKRDLKSNNDKLKNWKAALTEAANLVGWDSRNYRSEPDFIKDIVEDVLRKLNLRYPYEIKGLVGIQKNYKQIESMLKIGSHEVRVLGIWGMGGIGKTTLARALYAKMYSQFEGCCLLNVMDESNKYGQNVVHNKLLSSLLEEENIHPDASYIEAPFSERRIGRKKVLIVLDGVETLEQIEDLIPKIDGLGPGSRVIITTRDKHIFSQLSKCEIYEVKELEKPDSLQLFSLTAFKEKHPKTGYEDVSDSVIAYCKGNPLALKVLGANLSSRGREAWENELKKLQKIPNQKIYNVLKLSYDDLDRCQKAIFLDIACLLSGQGKDFVRDLLEASEFFAISGIDVLLDKALIQLDSILHVKREVCTIEMHDLLQEMGREIVNQESEDPGKRSRLWKAEEISDVLKNNKGTEAVEAITFDSTDVGDLYLKSNSFRRMTNLRYLKIYNKSRGNTCNVYFPDGLEWISDKLRYLRWEGYCLEYLPSTFCAEMLIELHLSHSKLKKLWDGVQNLVNLNILWLESSKNLIEIPDLSKATNLHRVYLFQCESLGQLHSSIFSLPDLRYLDLRGCKKIESLKTNIHSKSLRELLLDDCYSLTEFSVTSDEMTELSLGGTAIRELSSWIWRNRKLTSLGLSECNKLNIVGNKLTNDHGLGSVTELDLSGCTEINALSLWSILDGIQSLKRLTLHECCNLECLPENIRNHSMLKWLDLDGCRKLVSLTELPASLITLSGINCTYLETDSTQRSFLENMVQIFSKDPFHVNKDANYLFWPGAQVPCKFDFQTMKASITIPPIPKYNLSGFIFCTILSEGFLFQSHPLHCIILEHGKEVDRCIICFALYIVRLISDHVLLSWYCYKREKFGSNDCKLSFQFIHNVELGWSTEGIKGCGILPVYNLEHKSDLAGREIGKLKFSNQYSDRSNWSNNEIEDGQENYNDELQPSAIGGEVISSNIENEDDQKHPCCSIGLYLRHLLRGSKE*	1106

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g1501	1105	Pfam	Leucine Rich Repeat	619	637	IPR011713	-
	Mtr3g1501	1105	Gene3D	-	351	435	IPR042197	-
	Mtr3g1501	1105	SUPERFAMILY	L domain-like	498	863	-	-
	Mtr3g1501	1105	Pfam	NB-ARC domain	204	431	IPR002182	GO:0043531
	Mtr3g1501	1105	Gene3D	Ribonuclease Inhibitor	532	709	IPR032675	-
	Mtr3g1501	1105	Gene3D	Ribonuclease Inhibitor	710	873	IPR032675	-
	Mtr3g1501	1105	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	1074	IPR044974	GO:0006952
	Mtr3g1501	1105	SMART	till_3	18	158	IPR000157	GO:0007165
	Mtr3g1501	1105	ProSiteProfiles	TIR domain profile.	17	184	IPR000157	GO:0007165
	Mtr3g1501	1105	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	445	IPR027417	-
	Mtr3g1501	1105	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	1074	-	-
	Mtr3g1501	1105	Pfam	TIR domain	18	190	IPR000157	GO:0007165
	Mtr3g1501	1105	Gene3D	-	16	180	IPR035897	-
	Mtr3g1501	1105	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	161	IPR035897	-
	Mtr3g1501	1105	Gene3D	-	181	348	IPR027417	-
	Mtr3g1501	1105	PRINTS	Disease resistance protein signature	218	233	-	-
	Mtr3g1501	1105	PRINTS	Disease resistance protein signature	293	307	-	-
	Mtr3g1501	1105	PRINTS	Disease resistance protein signature	386	400	-	-
	Mtr3g1501	1105	PRINTS	Disease resistance protein signature	684	700	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g1501	Mtr-Chr3	26669617	26674893	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g1501	17	861	WRKY Transcription Factor Family	AT4G12020	32.009	5.80e-101	349

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g1501	-		-	mtr:MTR_3g058790	1578.53