Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1486 ATGTCTAGTGTTGGTATTCTCTTTAAGATGTCGATAGACGATCCGTGTTTTGTGGAATGGAAAGAGCATTTTGTTTCACAAGAGCGTGGCCATCGTATAGTTCACTATTACCTAAAGGACTCTGCTGGGGAGTCCTTTCTTGCAGTTGTCGGCACTGAGAGGAGTGTTAGACACATGTGCTATGTTATTGCAGAGGAGTTCTTGGAAATTTGTGGAATGGAAATTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTTGATTGGCTGACCTCGATGTTATCAAAGCAGCATCTGGAGGAAGATAGAAGTGTATGGCCTGTTCATAATTTGGCACTAGCTCACAAGATCGCAAATGGCAGTGTCAAAGAAGTTAGTGCACAAATGGTGGATGACAAGGATATTCCAAAGAGTAACTCCAAATTATCCAATTCAGACATCGTTTGGTCAGGACTTGCGTGGACATGTGGCAAACAACTCAAACATTATCCTGCTTTTTGCAGAAATGGGATCCAAATTGGGATTCAATCCTTTGTTTTTGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTAGAGGATATGTATGAAGATAGGAGGGGACAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAAGGTGCAATTCCTGTACGAAATACTCACCCACGGGAGGTTTTCATCACATCATATTCTCAAGTCATCAGTGCAGAGTGTGTTGATGGACCTGCCGCAGTCTTAACTCGGGAACACTTCGAAAAATGCACACCTTATTTTTCCCCCTCTTCAACAGACAGAATACATTTGTGCTTTAGGCAATTAAAAGGCAACAAAGTCAAGCCCTTTGACTTAAGCAAACTGCGTGGCTACTACACTCAGCCAGCTCTTTCTTCCTTGCGCGTTGATACTATCCACAACACCGAGTCTCACAGCAACAGCCTCACAGGAGAAGATGAAGATTTGGATGTTGGTGATGATGCAAAGCGGGGAGCCAAGAGGAGTAGAAGTGTTACTAATGGTCGAGAAGGGGTTAGGAAGTTGATTAGGAGTAATCCAATGATGGGATACCAAACTTTCCAAGTTGTAAATTATGCAAGGCCGGATAGGAGATTGCTTTCTCTGAAAAAGGTTGATTGTAAGCCTTGGTTTAATCCCACATACAAGGTTGATGACAAGATAGAGGTACTCTCTCAAGATAGTGGTATCCGAGGCTGCTGGTTCAGGTGTACAATTGTACAGGTAGCTCGGAAACAATTGAAAGTCCAATATGATGATGTTCAAGATGAAGATGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGACAACCTGGACGATCGACCATCAGACCAGCTCCACCTCTTGAAGAACAAGAATTGATTGTCGAGGTTGGAACTGCCGTCGATGCATGGTGGAGTGATGGATGGTGGGAGGGGGTTATAACTACAATTGACAACTGTGGTGATGACAATGTTCAAGTTTACTTTCCTGGTGAAAGCTTGCAAATGACAGTACATAAGAAGGACTTAAGAATATCTAGAGATTGGTTAGGCGGCACGTGGGTCAATATAAAGGCAAAGCCTGATATAACCCCAACTATATTAACTTCTATTAGCTTTAACACAAACCTCACTTTGTCTCCATCTTTGGAAAAAGATGCAGACTCGGTTGGTTTTGCTAATTCATGTCATGAAGTTCCTGCTGAGAAGTCTAATAAACCTGATATTGTTGAAGAGAAACTTGTATGTTGTGGTGTTGCTGAAAATGGGGTTTGTGTCCAAGATGATAAACCTCCTTCAGAAAAAAGTACCCAAGTTGGTGATATTGAAGATGATGGTGGTAACAATGACAACGGTGAGAGTGGTGATAACAAGAATGTTAATAATGAGAATAGCGATGCAAAGGTGATTCGGACTTCGAGTGTTGAGTGTAAAAGTGTAGAACTAATGGAAGTTACTGTATAA 2016 0.4196 MSSVGILFKMSIDDPCFVEWKEHFVSQERGHRIVHYYLKDSAGESFLAVVGTERSVRHMCYVIAEEFLEICGMEIPPGFKWRSRREVVDWLTSMLSKQHLEEDRSVWPVHNLALAHKIANGSVKEVSAQMVDDKDIPKSNSKLSNSDIVWSGLAWTCGKQLKHYPAFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNTHPREVFITSYSQVISAECVDGPAAVLTREHFEKCTPYFSPSSTDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLRVDTIHNTESHSNSLTGEDEDLDVGDDAKRGAKRSRSVTNGREGVRKLIRSNPMMGYQTFQVVNYARPDRRLLSLKKVDCKPWFNPTYKVDDKIEVLSQDSGIRGCWFRCTIVQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLEMRQPGRSTIRPAPPLEEQELIVEVGTAVDAWWSDGWWEGVITTIDNCGDDNVQVYFPGESLQMTVHKKDLRISRDWLGGTWVNIKAKPDITPTILTSISFNTNLTLSPSLEKDADSVGFANSCHEVPAEKSNKPDIVEEKLVCCGVAENGVCVQDDKPPSEKSTQVGDIEDDGGNNDNGESGDNKNVNNENSDAKVIRTSSVECKSVELMEVTV* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1486 671 Gene3D - 140 287 IPR043151 -
Mtr3g1486 671 Pfam BAH domain 178 273 IPR001025 GO:0003682
Mtr3g1486 671 MobiDBLite consensus disorder prediction 636 654 - -
Mtr3g1486 671 Pfam Agenet domain 396 471 IPR008395 -
Mtr3g1486 671 MobiDBLite consensus disorder prediction 313 346 - -
Mtr3g1486 671 MobiDBLite consensus disorder prediction 611 654 - -
Mtr3g1486 671 SMART BAH_4 172 291 IPR001025 GO:0003682
Mtr3g1486 671 PANTHER OS07G0607300 PROTEIN 13 656 - -
Mtr3g1486 671 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 656 - -
Mtr3g1486 671 MobiDBLite consensus disorder prediction 318 346 - -
Mtr3g1486 671 ProSiteProfiles BAH domain profile. 172 291 IPR001025 GO:0003682
Mtr3g1486 671 SMART agenet_At_2 477 535 IPR014002 -
Mtr3g1486 671 SMART agenet_At_2 391 456 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1486 Mtr-Chr3 26459597 26464877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1486 403 533 PHD Transcription Factor Family AT5G58610 31.111 1.48e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1486 - - mtr:MTR_3g058500 1350.88