Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1481 ATGGCAGTTTCTTCTCTCTCAGCAACATTCATTCCTTCTCTTTCTCTCTCCTCAAATTCTTCACCATTGTTATCTTCAAAGCTAAAGCTTCAATCTCTATGCTTTGTTTCTGGTAATACGTTGAGGATTACAAATGCAAAACCTCTTCAATTGTCTACTGTTGTTCATGCTGCTCCTGAAGTTTTGAATTCTGAGGTTGATGACTTAGAGACTCCGAGCACGTCAGAAATTAGCATTGGGGATAATGCAGACATGTTGGCACCAAAGCACAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATATTGGATGCAGCGAGAACCACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCCCACGTACACAAGGATGCTCGGTTCCATTTCGAGGTCAGAACTCATCAGCGTGTCATTGATATTCTCTTTCCTACAGCACAAACAATAGATTCTCTCATGCTGCTTCAGCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA 567 0.4233 MAVSSLSATFIPSLSLSSNSSPLLSSKLKLQSLCFVSGNTLRITNAKPLQLSTVVHAAPEVLNSEVDDLETPSTSEISIGDNADMLAPKHKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEVRTHQRVIDILFPTAQTIDSLMLLQLPAGVDVEVKL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1481 188 Gene3D Ribosomal protein S10 domain 81 188 IPR036838 -
Mtr3g1481 188 PRINTS Ribosomal protein S10 family signature 91 104 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 PRINTS Ribosomal protein S10 family signature 126 141 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 PRINTS Ribosomal protein S10 family signature 147 161 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 188 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 TIGRFAM rpsJ_bact: ribosomal protein uS10 91 187 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 SMART Ribosomal_S10_2 93 187 IPR027486 -
Mtr3g1481 188 Pfam Ribosomal protein S10p/S20e 93 187 IPR027486 -
Mtr3g1481 188 ProSitePatterns Ribosomal protein S10 signature. 115 130 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 SUPERFAMILY Ribosomal protein S10 91 188 IPR036838 -
Mtr3g1481 188 Hamap 30S ribosomal protein S10 [rpsJ]. 89 188 IPR001848 GO:0003735|GO:0005840|GO:0006412
Mtr3g1481 188 PANTHER BNAC05G40270D PROTEIN 1 188 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1481 90 186 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 34.694 1.05e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1481 K02946 - gmx:100306286 255.758