Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1428 ATGGGTGTTGCTGCTAATGGGGGGAGCTATAAGACCACCCATCATCCATATAAGCTGAACGTCCAATTTGGAACAAAATGTTTGCCATTGTGTGGTGCATTAGTGAGTGGTTCTGATTTTAAGTTTGTTCCAATTTTTGACATAGTAGGTGGTTCTTATGATTGTGACTACTTGGTTGATGTTATTGGAATGTTGACGGGTGTTGGCACAGAGAGAGAATATGAACGCAATGGCAGTGCTACCAAACTCAATGTCATTGCCATGGAAGCTGATGGATACAAGCTTCAGTGCACTTTGTTTGGGACTTATGTAGATGAGTTGAACACGTTTTTGGCAACTGGTGAAACTGCTAATGTTGTAGTGTCTATTCAACTAGCTAAGGTGAAGGTTTTTCAAGACAATATACACATTCAAAATTGTCTGAATTGTACCCGGTTGAAGTTTAATCCTGTTTGTGCTGAGGGTACTGCCTTTAAGAACAGGATGATTGAAAATGATGATACACCATCCCCTCTTACTCAGCTAGCTGTGGAACCAAGTATTGACCCTTTGCAAGATTTTTTATTCAACACTCCAAGAACAACTATTCAGGGATTGAAGGATTCTCAGCAGGAGGGGATGTATGTTGTGCTTGGAACTGTCAAACAGATTGTGAACCCTGAGAATTGGTACTACACGGCCTGTATGTGCAACAAATCTGTATATCCTGCTGAGGGGATGCACTTCTGCGAGAAGTGTAATAGGCATGTGGTCAAAGTGTTTCCAAGGTATTCTATAAAGGTGCGAGTTGTGGATGATAGTGATTGTGCAACCTTTGTTTTGTTTGACCGTGATGCAACAATGTTGTTCAATAAAAGTTGTGCTGACATTTTGGAAACACATAGGGCTGACGAGGGTGTGCTTCCAACTGAGATTGGTGCATTGGTCAACTGCACATACCTGTTCAAGGTTGAATTCAAAACTGCTATCAGTCCTAGATTTGAGCAATCATTTAGGGTGAAGAAAGTGTGCACTGATGGGGTGATTATCAACCAGTTTAAGGCAAAGTGGGCTAAGGAAGAAGCAACCTTTATAAAAAATACCAATGAGATGGGGTCTTTGAGTTCTCTGTTGGACAAGGGGAAGGATATGTTAGTGGTTGGTTCATCAAGTGTCCAATCACATGACCTTGGAAGTTTGAGCGAAACCATTGATAAAGACAAAAACATCATTGTTGAGGGAACACCTATTGGAATATCTGAAGATCTGTTGCCTAAATTTTCTTCTGTTGCGGTTGACCTTGATGTTGGTGCATCAAAGAAAGTATCTAACTGCTGTTTGGTCAAGTCAACTACACGCAAAATTGTCAAAAGAGTTTTACCTCAACCTGAAATTAATGAAGTTGAGGAAATCAACCTTCCCATCAAATTGCTCAAGAGGAACATTAAGATTGAAAAAATTTAG 1443 0.4033 MGVAANGGSYKTTHHPYKLNVQFGTKCLPLCGALVSGSDFKFVPIFDIVGGSYDCDYLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVCAEGTAFKNRMIENDDTPSPLTQLAVEPSIDPLQDFLFNTPRTTIQGLKDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIGALVNCTYLFKVEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDMLVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISEDLLPKFSSVAVDLDVGASKKVSNCCLVKSTTRKIVKRVLPQPEINEVEEINLPIKLLKRNIKIEKI* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1428 480 Gene3D - 37 170 IPR012340 -
Mtr3g1428 480 SUPERFAMILY Nucleic acid-binding proteins 40 160 IPR012340 -
Mtr3g1428 480 SUPERFAMILY Nucleic acid-binding proteins 191 344 IPR012340 -
Mtr3g1428 480 CDD RPA1_DBD_B_like 60 150 - -
Mtr3g1428 480 Pfam Replication factor-A C terminal domain 209 322 IPR013955 -
Mtr3g1428 480 Gene3D - 188 340 IPR012340 -
Mtr3g1428 480 PANTHER REPLICATION FACTOR A 1, RFA1 3 291 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr3g1428 480 CDD RPA1_DBD_C 202 320 IPR013955 -
Mtr3g1428 480 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 3 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1428 Mtr-Chr3 25625941 25630804 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1428 33 334 Core DNA Replication Machinery Family AT4G19130 23.125 7.84e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1428 - - mtr:MTR_3g056270 968.378