Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1422 ATGCAAACATCTCAGAACCATGAAATTTCTTACGGCTCTGACAGGTTCTACGTTGAGCCTGTGCAGAATCTCGAGTCGTATTGCTTACCCTCAATTGAGAATCTAGACAATTATTCTTCCTCTGATAACAGCTGCCAAACATTTTATCCTTCTCATCAAACTCTAGAACCATACAACACCCTTGAATCTGCTTCAACAAGCAACAACAGTTTACCTTACCAAAATTCTCCCTCTACTCACAGTTTTTCACCTAACAATAGTCCAGGTTCTACGTTAAGGCCGCAACATTCACTTGAATTTGTCAATGGTTCACCTGAGGAGGAGGATTCTTACTTGATATATCATGATCATGATGACCTAAGGCATAAGATGAGTGAGCTGGAATCTGTTATGCGAGGACCTAACGTAGAGATGCTAGAGATGTATGATACCAAAGTTCAAGAAGAATCTGCTTCATTCTTATTAGAGGCAGAGAAGTGGAAGAAAAACGTGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAAGCAGTGGATGAGAATGATATCGAGACAATTGAATGGATGGTAACTGAGTTACGCAAAATAGTATCCGTTTCAGGCAGTCCAATTGAACGATTGGGAGCGTACATGTTGGAGGCACTTGTTTCAAAGATTGCCTCTTCTGGAAGTACAATCTACAAATCGTTAAAATGCAGCGAGCCTACTGGTAATGAACTGCTTTCCTACATGCATGTACTTTATGAAATATGTCCGTACTTTAAGTTTGGATACATGTCTGCAAATGGGGCCATTGCGGAAGCTATGAAGGAGGAAAATGAAGTCCATATAATTGATTTTCAGATTGGACAAGGAACTCAGTGGGTGAGTCTAATCCAGGCTCTTGCTCGCCGCCCTGGAGGACCTCCAAAGATTAGAATAACAGGTATTGATGACTCTTATTCATCTAATGTCCGCGGTGGGGGCGTTGATATAGTAGGGGAAAAGTTATTGACGCTTGCGCAGTCATGTCATGTACCCTTTGAGTTCCATGCTGTTAGAGTGTATCCTTCTGAAGTGCGACTCGAAGACTTTGAACTTCGACCTAATGAAGCTGTGGCGGTGAATTTTGCCATTATGCTACACCATGTACCAGATGAAAGTGTGAACATTCATAATCATCGTGATAGGTTGCTGCGATTGGCTAAACACATGTCTCCTAAGGTGGTGACTCTAGTTGAGCAAGAATTCAACACCAATAACGCTCCGTTCTTGCAGCGTTTCCTCGAGACAATGAACTACTACTCAGCAGTTTATGAATCGATTGATGTTGTTCTTCCAAGGGATCACAAAGAGAGGATTAATGTCGAACAACATTGTTTGGCTCGTGAAGTTGTGAACTTAGTAGCTTGCGAAGGGGAAGAAAGAGTGGAACGTCACGAGCTTCTGAGTAAGTGGAGAATGCGTTTCACGATGGCTGGATTTACGCCTTATCCATTGAGCTCCTTCATCAATTCTTCAATCAAGAATCTTCTCGAGAGCTACCGTGGACATTACACCCTAGAAGAGAGAGATGGTGCACTGTTTCTTGGTTGGATGAATCAAGATCTTATTGCTTCTTGTGCTTGGAGATGA 1629 0.4217 MQTSQNHEISYGSDRFYVEPVQNLESYCLPSIENLDNYSSSDNSCQTFYPSHQTLEPYNTLESASTSNNSLPYQNSPSTHSFSPNNSPGSTLRPQHSLEFVNGSPEEEDSYLIYHDHDDLRHKMSELESVMRGPNVEMLEMYDTKVQEESASFLLEAEKWKKNVEMVSRGDLKEMLYTCAKAVDENDIETIEWMVTELRKIVSVSGSPIERLGAYMLEALVSKIASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEENEVHIIDFQIGQGTQWVSLIQALARRPGGPPKIRITGIDDSYSSNVRGGGVDIVGEKLLTLAQSCHVPFEFHAVRVYPSEVRLEDFELRPNEAVAVNFAIMLHHVPDESVNIHNHRDRLLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFLETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLSKWRMRFTMAGFTPYPLSSFINSSIKNLLESYRGHYTLEERDGALFLGWMNQDLIASCAWR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1422 542 Pfam GRAS domain family 172 542 IPR005202 -
Mtr3g1422 542 ProSiteProfiles GRAS family profile. 163 542 IPR005202 -
Mtr3g1422 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 541 IPR005202 -
Mtr3g1422 542 MobiDBLite consensus disorder prediction 62 97 - -
Mtr3g1422 542 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1422 Mtr-Chr3 25511173 25514414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1422 16 542 GRAS Transcription Factor Family AT5G48150 56.792 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr3g1422 GRAS 1.3e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1422 - - gmx:100785400 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1422 3 25511173 25514414 Mtr5g3354 5 42465874 42469066 PCT