Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1421 ATGGACGCCGCCGGCGATACCCAATTCCGGCGACAAACTCCCGCCGGCGAAATGGAACACCATTCTGAAGATCCAAATCGAACCGGGTCATCTTCGCGACCCGATTCTTTTTCTGATGGACCCACCACCTCTGGAGCTAGATACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCTAGGTCGCCGGTTTTGACGATTCCGCCAGGACTTAGTCCGACTTCGTTTTTGGAATCACCAGTTCTTCTCTCAAATATGAAGGTAGAACCTTCACCTACAACAGGCTCCCTTCCTCGGCTTCAACAAACAGTACATGGTTTTGTAACTTCTTCTACGTCCGCTGCGTTTCCTGTAACCTCTGCGTGCTTCAATTCTAATTCTGTTGACGACGGAAAATCCAGCTTCTTTGAGTTCAAACCGCACAGTAGATCAAATATGGTTCCTGCTGACTTTTACAACCATGCATGTGAACAATCTACTCAAATTGACGGTCAAGGAAATGTTAAATCTTTTGTCTCGTCAGCACTGGTCAAAAGTGAAACGGCAGTCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGATTAGTTCAGGGGCTAGTGCTCATGTTGAAGTCGATTTGGACGAATCAAATCCCAGTGGCAGCAAAGCAACTGGGCTTCAAGTATCACAAGTTGATGGTAGGGGCAATGGACTTTCAGTTGCTGCCGATAAGGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGTAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTCGAACGCTCTCATGACGGCCAAATTACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATTCTCTGGTGGAAATATGATGTCTGTGCAAGAAGAAAGATCTGATAGGGCTTCTTTGACTAGCCGAGACGACAAAGACTTTAATAATTATGGTCAGATGTCTCATGCAGCTGAGCGTGACAGTACTCCAGAGCTATCGCCTATAGCAGCAAATGATGGTAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCAGAATAACGACGAGGTTGATGAAGATGATCCTTTCTCAAAGAGAAGAAAGATGGATCTTGACATCACACCGGTAGTTAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCCGGTTGCCCGGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGCATAATAGTCATGACATGGCAGGACCATCGGCTGCAGGTGGACAGACAAGAATCCGGCATGAAGAAAGTGACACTATTAGCCTTGACCTTGGAATGGGCCTCAGCCCAACCGCCGAAAATAGACCAAACAGTCTAGGGAGAATGATGCGCAATGAATATGGCGACAGCCAAACACATAACGGCAATTCCAGTTTCAAGTTTGTTCATAGTTCTACACCACCTCCAGTATACTTTGGTGTACTAAATAACAGCGCAAATCCATATGGTTCTAGAGAAAATCCAAGTGATAGTTCATCTTTAAACCGTTCTGCTTATCCTTGCCCACAGAACATGGGAAGAATAATTATGGGTCCCTAA 1788 0.4519 MDAAGDTQFRRQTPAGEMEHHSEDPNRTGSSSRPDSFSDGPTTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTVHGFVTSSTSAAFPVTSACFNSNSVDDGKSSFFEFKPHSRSNMVPADFYNHACEQSTQIDGQGNVKSFVSSALVKSETAVPSDEISLSSSPVQMISSGASAHVEVDLDESNPSGSKATGLQVSQVDGRGNGLSVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRFSGGNMMSVQEERSDRASLTSRDDKDFNNYGQMSHAAERDSTPELSPIAANDGSPEGAGFLSNQNNDEVDEDDPFSKRRKMDLDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARHNSHDMAGPSAAGGQTRIRHEESDTISLDLGMGLSPTAENRPNSLGRMMRNEYGDSQTHNGNSSFKFVHSSTPPPVYFGVLNNSANPYGSRENPSDSSSLNRSAYPCPQNMGRIIMGP* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1421 595 MobiDBLite consensus disorder prediction 475 494 - -
Mtr3g1421 595 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 32 575 IPR044810 GO:0003700
Mtr3g1421 595 MobiDBLite consensus disorder prediction 564 588 - -
Mtr3g1421 595 MobiDBLite consensus disorder prediction 564 583 - -
Mtr3g1421 595 Pfam WRKY DNA -binding domain 415 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 MobiDBLite consensus disorder prediction 13 28 - -
Mtr3g1421 595 MobiDBLite consensus disorder prediction 1 48 - -
Mtr3g1421 595 ProSiteProfiles WRKY domain profile. 409 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 MobiDBLite consensus disorder prediction 291 384 - -
Mtr3g1421 595 SUPERFAMILY WRKY DNA-binding domain 240 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 Gene3D WRKY domain 235 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 Gene3D WRKY domain 399 475 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 32 575 - -
Mtr3g1421 595 ProSiteProfiles WRKY domain profile. 237 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 SUPERFAMILY WRKY DNA-binding domain 406 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 MobiDBLite consensus disorder prediction 29 45 - -
Mtr3g1421 595 SMART WRKY_cls 242 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1421 595 SMART WRKY_cls 414 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1421 Mtr-Chr3 25502624 25509798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1421 51 595 WRKY Transcription Factor Family AT4G26640 56.655 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr3g1421 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1421 - - gmx:100781491 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1421 3 25502624 25509798 Mtr5g3352 5 42457197 42461609 PCT