Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1399 ATGAAAGTTGTTTTTCATATTGTGAACTACACTAATCTATGTAAGCCCACTGTTAGGATGAACAAGGGAAAGAAGATTGCTATTACTCGTCCTTATGACAATGTGAAGGATGTGAATGACTCCAAAGATGTTTGGAGTCTTGCTGTCAGGGTCATGGATCTTTGGTGTGTTACTGGTAAGTACAGACAGGAGCAGTACTTGGAGATGGTAATTGCTGATAAGGAGAATGACATGATCCAGCTGACTGTTCCATATGAGGAACTTGCTAAATGGAAAGAAATCTTGAAGGAGAACAATACTTATACAATGCTAAATTTTAAGGTATTGAAAAACGATGTTGCGGTCAAAGCTTCGACTCATCCTTTCAGACTTGCAGTTTCAGGAGCAACCATTATCAAACCAGTTGATTTTCCTACCATCCCTTTAGCCTCTTTCAGATTTAAAGACTTTGGAGAGATTCTGGCTGGAAACTACAGGAATGATCTGCTCATAGATGTCATTGGAGCTTTCCAAGATATTACTAATACAAATAAAAAGGGAACAATCATAAGATCAGTCACTTTTCTTCTTAAGGATGCTAGTGGCCTAATGATTCATGCCACACTTTGGGATGAGTTTGCAAAGCAATTCTTTGATGCTTTTAACCAGGCAAATGGACCTGAAACAATCTTCATTGTTCTCAAGCATGTGAGGGCTAGAGAAGCACAAGGTATTTATCCTTTGTGTGTCACCAATACCTGGTCTGGAACTAAGGTCATAATCAATGCTGAGATTCCTGAAATTGCTGAGTTTAAGACTAGATTTGCAGAACTTCCAATTGATGATGTCAATGCAAGCCAACAATTGTCACAACTTACCCAAGGATCTCAGATAACTCAACAAGGGGATATCATGAATAAGGCTCATTTTCTCACTCTTTCTGAGGTCAATCATGTGATGCATGAAACCATTTGTGTAACTATTGCTGAAATCAAAAAGATCAATGCCAACAAATATGGATGGATCTATGATGGATGCAATTTTTGTACTAAAGGTGTGAGGATGGATAATGGCCAACTCAAATGTAGAGGAAACCATATTAATGATGAAGCAAAACCCAGGTTTAGGGTTGAGGTTGAAGCTGTTTACAAGAATGATAAGGCAAAGTTTTTGTTATGGGACAATGATGTTGCATCCATAATAGGAATGTCTGCTCAGGAGCTGAAAGAACAGTTGGTTGAGGTTAACATTTTCCATTACTTCTAA 1245 0.3815 MKVVFHIVNYTNLCKPTVRMNKGKKIAITRPYDNVKDVNDSKDVWSLAVRVMDLWCVTGKYRQEQYLEMVIADKENDMIQLTVPYEELAKWKEILKENNTYTMLNFKVLKNDVAVKASTHPFRLAVSGATIIKPVDFPTIPLASFRFKDFGEILAGNYRNDLLIDVIGAFQDITNTNKKGTIIRSVTFLLKDASGLMIHATLWDEFAKQFFDAFNQANGPETIFIVLKHVRAREAQGIYPLCVTNTWSGTKVIINAEIPEIAEFKTRFAELPIDDVNASQQLSQLTQGSQITQQGDIMNKAHFLTLSEVNHVMHETICVTIAEIKKINANKYGWIYDGCNFCTKGVRMDNGQLKCRGNHINDEAKPRFRVEVEAVYKNDKAKFLLWDNDVASIIGMSAQELKEQLVEVNIFHYF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1399 414 Gene3D - 285 410 IPR012340 -
Mtr3g1399 414 PANTHER REPLICATION FACTOR A 1, RFA1 41 387 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr3g1399 414 Pfam Domain of unknown function DUF223 68 163 IPR003871 -
Mtr3g1399 414 SUPERFAMILY Nucleic acid-binding proteins 145 268 IPR012340 -
Mtr3g1399 414 CDD RPA1_DBD_A_like 46 132 - -
Mtr3g1399 414 Gene3D - 139 272 IPR012340 -
Mtr3g1399 414 SUPERFAMILY Nucleic acid-binding proteins 315 405 IPR012340 -
Mtr3g1399 414 Gene3D - 31 136 IPR012340 -
Mtr3g1399 414 CDD RPA1_DBD_B_like 165 268 - -
Mtr3g1399 414 SUPERFAMILY Nucleic acid-binding proteins 31 135 IPR012340 -
Mtr3g1399 414 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 41 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1399 Mtr-Chr3 25134710 25136652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1399 15 401 Core DNA Replication Machinery Family AT5G45400 22.381 3.16e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1399 - - mtr:MTR_3g055660 806.979