Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1373 ATGGCATCTTCTTCAGACTCATGGTTGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCGTCTGCTATAAGAAGGAAAATCACAATATTGGGGACCCGACTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGCCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTTTGCAACGACAAGTTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTATTGAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAGGGCGGTTGCTCATGCATGTGCATGCTATTAGCAGTGATTGGTATAGTGGGTTTGGTTCTTGTCATATGGCTTCTGGTCAAATATTTGTAG 690 0.4174 MASSSDSWLKEYNEAMKLADDISGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKNLAILNKRTKGGCSCMCMLLAVIGIVGLVLVIWLLVKYL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1373 229 SMART tSNARE_6 128 195 IPR000727 -
Mtr3g1373 229 CDD SNARE_Qc 136 193 - -
Mtr3g1373 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Mtr3g1373 229 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 224 - -
Mtr3g1373 229 Pfam SNARE domain 170 221 IPR000727 -
Mtr3g1373 229 Gene3D - 134 197 - -
Mtr3g1373 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Mtr3g1373 229 PANTHER SYNTAXIN 1 224 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1373 Mtr-Chr3 24916889 24921435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1373 1 229 SNARE and Associated Proteins AT1G79590 74.678 5.91e-124 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1373 K08503 - gmx:100794038 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1373 3 24916889 24921435 Mtr5g3335 5 42255155 42259527 PCT