Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1349 ATGGCAGAAGTGAATCCGTGTAAGAAACTAGCAGACAGGTATCTGAAGCGCGAAGTTCTTGGTGAAGGTACCTATGGTATCGTGTTCAAAGCCATTGATACCCAGACCGGACAAATGGTTGCAATTAAGAAGATTCGGAAACGGATTGATGAGCCGCTGGACGGGGTTAATTTTACAGCTCTTAGAGAAATAAAACTTCTCAAAGAGCTCAAACATCCAAACATTGTTGATTTGATTGATGTATTCCAATATAAACAGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCGGTCATAAGAGACCGAAATATTTTCCTCTCACCAGCTGATATTAAATCTTACCTTCTAATGATACTAAAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTGAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTGAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGATCACGAGTTCCCTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAAGAAGTATGGGTCAGGGGTAGATGTTTGGGCTACAGCTTGTGTATTTGCTGAGCTTCTTCTTCGTAGACCTTTTTTGGAGGGATCAACTGATACACATCAAGCACGGAAGATTTTCACAGCATTTGGAACCCCATCACCTTCCCAGTGGCCTGATATGATGTACCTTAAATATTATGTTCAAGAAAAATATATTGCTGCTCCCCCGTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTATCAAAGATGTTTACCTACGATCCAAATGCTAGAATTTCTGTGCAGAAAGCATTAGAACACAGGTACTTTTCTTCTGTGCCTCTTCCCACAGATCCAGAAAAGCTTCCAAGACCTGTTCCCAAGAGGGAATCTAGGGTCTCAGATCTGAATTCTTTTCAATTATCACCTTCAAGAAAGATTAGAAGAGTGATGCCAAGGTGTGATGGATTTGAAGGCAGTACGTTGGAAAGAAATAAGATTGATGATAATGTTGGTAATTTCAAACATACAGTTGGCGATAATACTGGCACAAATGAGCCCACACCAAATTCACTAAATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATTACCAGTGCTGACAGATCACATTTGAAAAGGAAATTAGATTTAGATTTCCAGTAG 1233 0.3958 MAEVNPCKKLADRYLKREVLGEGTYGIVFKAIDTQTGQMVAIKKIRKRIDEPLDGVNFTALREIKLLKELKHPNIVDLIDVFQYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLLMILKGLAYCHKKWVLHRDVKPNNLLIGQNGQLKLADFGLSQIFGDPDHEFPDQAFARWYRAPELLFGAKKYGSGVDVWATACVFAELLLRRPFLEGSTDTHQARKIFTAFGTPSPSQWPDMMYLKYYVQEKYIAAPPLRSLFPMASDDALDLLSKMFTYDPNARISVQKALEHRYFSSVPLPTDPEKLPRPVPKRESRVSDLNSFQLSPSRKIRRVMPRCDGFEGSTLERNKIDDNVGNFKHTVGDNTGTNEPTPNSLNFSVFGLKPPNRPTITSADRSHLKRKLDLDFQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1349 410 MobiDBLite consensus disorder prediction 302 323 - -
Mtr3g1349 410 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Mtr3g1349 410 Pfam Protein kinase domain 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1349 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Mtr3g1349 410 SUPERFAMILY Protein kinase-like (PK-like) 9 304 IPR011009 -
Mtr3g1349 410 MobiDBLite consensus disorder prediction 361 376 - -
Mtr3g1349 410 ProSiteProfiles Protein kinase domain profile. 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1349 410 MobiDBLite consensus disorder prediction 356 376 - -
Mtr3g1349 410 Gene3D Transferase(Phosphotransferase) domain 1 97 312 - -
Mtr3g1349 410 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 353 - -
Mtr3g1349 410 Gene3D Phosphorylase Kinase; domain 1 5 96 - -
Mtr3g1349 410 CDD STKc_CDK7 13 309 IPR037770 GO:0005675|GO:0008353|GO:0070985
Mtr3g1349 410 SMART serkin_6 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1349 410 PANTHER CELL DIVISION PROTEIN KINASE 9 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1349 Mtr-Chr3 24656000 24662712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1349 8 410 Core Cell Cycle Gene Families AT1G18040 65.848 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Mtr3g1349 Pkinase 4.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1349 K02202 - jre:109020969 625.935