Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1344 ATGGGTAGCGAAGAAGAGAGAGTTCTTGAAAACCAACTGGAACTTCAATTACATGAACAAAGAGATTCTCTCACTGCTATCGATCATGCTCTTCTCCTTGATCCAACCAATTCTGAACTCCTCGAGGTTCACGAGGAACTTGTTCAGGCAATTAAGGATGCCGAGGAAGGACTTCTTCATCTAAAGCGTGCGAGATTATTATCCGAAGCAGACACAGTGCTGTGCAGTACTGATATTTTTGCTGAAGAAGAGAAAGTGGAGCCACTTGATCCTGCAGATGTTGAACCAGAGCCGCTAGAAGAAAAAAGCTTTTCTGTTGGATCTAAATGTAGATTCCGTTACAAAGATGGGCGTTGGTACAATGGTCAAGTGATGCAATTGGATAATTCAGTGGCGAAGATTTCTTTTCTTACTCCTACATCTGAAAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCCCATGGAGTTGATGTTCAACTGACTTCCCTTAAGGAATATGCTCCAACAATTTGGAAGCCGTCCCTTGCTGGGTCAAGTATATGGGCAGTCTCAAATGCAAATGCAGGCATTTGGAGAGCAGCCGAGCTTGAGTCATGGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGCTTGGTGCACAAGATATGGTATTATCTGAGTATGCAGATATGAGTGACATAGATAGTGATTCCAGCTTAGAACAATCCGATTACAGCGGCTCAGAGGAAGAGGAACCACAGGGTTTAGGATTTATGGATAGTACCAACTTACAGAAAGGCGTTCAAACCGAAACTGCTATATTTGCAAAGTGGGAGAACCATACCAGAGGCATGGCTTCCAAAATGATGGCGAATATGGGTTACCAAGAAGGAATGGGTTTAGGCTTAACTGGTCAGGGTATGGTTGATCCCATACCAGTGAAGGTTCTACCACCTAAGCAGTCCTTAGATCATGCACTTAAGTCTCATAAAGTGGAAGGGAACACAGAGAAGCAAAGGAAGAAACGGACCAGAGGTGGTAAGAGAAAACGCGAGAAGAGATTTGCAGAAGCAATTCGTGCCGCAAAAGAAGAAGAAGAATCGGCCCCAGATGTCTTCTCGCTAATAAACACTCAACTAGCCATGCACGGTGAAGCTTCCAATGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCAGGTGAAGGTAAAAAGGTGGATAGAAAAATGTTGGTTGCTTATGAGAATGATGTGAAGGATTTGAAAGTGCAGGTTCTAAAATTTGAACAAATGGCAGAAGCAAATAAAAGAGAAAAACCTGTTTATGATGCTGCTATGAAAAAATTAGTCCAAACCCGCAAGGCATTGGCTGAGGCTGAAGCAGTTCATGCCTCTGCCTCAGATGATGTTGTTAGCAAAGAAAAAGATAAGAGATGGCTTAAGTTTTAG 1482 0.4265 MGSEEERVLENQLELQLHEQRDSLTAIDHALLLDPTNSELLEVHEELVQAIKDAEEGLLHLKRARLLSEADTVLCSTDIFAEEEKVEPLDPADVEPEPLEEKSFSVGSKCRFRYKDGRWYNGQVMQLDNSVAKISFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVQLTSLKEYAPTIWKPSLAGSSIWAVSNANAGIWRAAELESWDEKAGVGQVVFRDDGSSVKLGAQDMVLSEYADMSDIDSDSSLEQSDYSGSEEEEPQGLGFMDSTNLQKGVQTETAIFAKWENHTRGMASKMMANMGYQEGMGLGLTGQGMVDPIPVKVLPPKQSLDHALKSHKVEGNTEKQRKKRTRGGKRKREKRFAEAIRAAKEEEESAPDVFSLINTQLAMHGEASNGSMKKQQSKGSGEGKKVDRKMLVAYENDVKDLKVQVLKFEQMAEANKREKPVYDAAMKKLVQTRKALAEAEAVHASASDDVVSKEKDKRWLKF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1344 493 MobiDBLite consensus disorder prediction 339 366 - -
Mtr3g1344 493 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Mtr3g1344 493 Gene3D - 105 178 - -
Mtr3g1344 493 Coils Coil 422 442 - -
Mtr3g1344 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 493 - -
Mtr3g1344 493 Coils Coil 44 64 - -
Mtr3g1344 493 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Mtr3g1344 493 MobiDBLite consensus disorder prediction 245 275 - -
Mtr3g1344 493 Coils Coil 453 473 - -
Mtr3g1344 493 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Mtr3g1344 493 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Mtr3g1344 493 SMART G-patch_5 292 338 IPR000467 GO:0003676
Mtr3g1344 493 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Mtr3g1344 493 MobiDBLite consensus disorder prediction 395 416 - -
Mtr3g1344 493 Pfam G-patch domain 294 336 IPR000467 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g1344 G-patch 3.6e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1344 - - gmx:100794921 718.768