Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1343 ATGGGTCGTGGAAACGGCGCAACCGCAACAACAGCGGCTGAACCCGGTTCAAACCCGGTTTTTTTCAAAGAGCCGAGATATCGTGGTGTTAGAAAAAGACCGTGGGGACGGTTCGCCGCCGAGATCAGAGACCCTTTGAAGAAAGCAAGAGTTTGGCTCGGAACTTTCGACACGGCGGAACAAGCGGCGCGTGCATACGACACCGCCGCTAGAAACCTCCGTGGACCAAAAGCAAAGACGAATTTTCCTCTTCAACAGCCTTTTTACCATAATCTTGACGCAGCAGGAGATCCGTTTTCCGATCAACGTTTCTTCACCGGCGCCGGTGCCGGAGTTGTTGCCGGTGAGTATCAAGATCATCGGAGACCTACTTCATCTGGTATGAGCAGTACCGTTGAATCTTTCAGCGGTCCACGCCCATTTCTTCCACCGGCTATCCCGTCGGCGGTGACCGGAAGAAGGTATCCTCGTACACCGCCGGTTGCACCTGAAGATTGCCGGAGTGACTGTGATTCATCATCTTCCGTTGTCGATGACGGCGACAACGACAACGCGGCTTCGTCGGTGATGCTTTCGTTTAAACGCGCTCCTCTGCCGTTTGATCTCAACGCGCCGCCGTTGGAGGATGCTGACGTGGCAGGTGGTGAGGATCTACACTGCACCGTTCTATGCCTCTGA 678 0.5457 MGRGNGATATTAAEPGSNPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEQAARAYDTAARNLRGPKAKTNFPLQQPFYHNLDAAGDPFSDQRFFTGAGAGVVAGEYQDHRRPTSSGMSSTVESFSGPRPFLPPAIPSAVTGRRYPRTPPVAPEDCRSDCDSSSSVVDDGDNDNAASSVMLSFKRAPLPFDLNAPPLEDADVAGGEDLHCTVLCL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1343 225 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Mtr3g1343 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 200 - -
Mtr3g1343 225 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Mtr3g1343 225 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Mtr3g1343 225 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Mtr3g1343 225 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Mtr3g1343 225 PANTHER ETHYLENE RESPONSE FACTOR 1 200 - -
Mtr3g1343 225 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Mtr3g1343 225 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Mtr3g1343 225 MobiDBLite consensus disorder prediction 168 183 - -
Mtr3g1343 225 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g1343 225 MobiDBLite consensus disorder prediction 122 136 - -
Mtr3g1343 225 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Mtr3g1343 225 MobiDBLite consensus disorder prediction 119 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1343 Mtr-Chr3 24578864 24580312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1343 1 225 AP2-EREBP Transcription Factor Family AT3G20310 55.823 4.13e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr3g1343 AP2 5.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1343 K09286 - gmx:100782025 291.197