Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1338 ATGGGTCAGTTTCATAGTGATTTGGATCATGAGGGTATTGATTGTATGTTCAAGGTTGTTATGATTGGTGACTCTGGTGTTAGAAAATCTCAGCTTTTGAATAGGTTTGATAGAAATGAGTTTCATTTGAAATCTAAAGCTACAGTTGGTATTGAGTTTTTGACCAAAACTTTTGATCGTAATGAGAAATATCAAGGTTCTAGAATGTATGAGTGTGATTTGTGCGACAAAAGGTTCAACGCTGGCAACACACTCGGTGGCCACAAAACATCTCACTTCTACTTACACCTTCATGGACATGATCATGCTATTAATAAGGATGATGATGATGATGATGATCAGAAACAGAAACATGGTTGTCTTGTTTGCAACAAGGTTTTTTCATCCAATAAGGCTTTATGCGGACATATGATATTGCACCGTGATAAGGGTCCCAAGAGTACTCAATCTCCAACCACATCCTTTGAAAAATTTCAAATTTCAAGTTGGTATTGCACCACCAAGGTCACCTACATAAAAAGCTCAAAGCTTCAAGCAATGTGGATAATGAAAAGATCGAGAAACAAGTTGGTGACATTAATGTAA 585 0.3675 MGQFHSDLDHEGIDCMFKVVMIGDSGVRKSQLLNRFDRNEFHLKSKATVGIEFLTKTFDRNEKYQGSRMYECDLCDKRFNAGNTLGGHKTSHFYLHLHGHDHAINKDDDDDDDQKQKHGCLVCNKVFSSNKALCGHMILHRDKGPKSTQSPTTSFEKFQISSWYCTTKVTYIKSSKLQAMWIMKRSRNKLVTLM* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1338 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 65 IPR027417 -
Mtr3g1338 194 Pfam Ras of Complex, Roc, domain of DAPkinase 18 65 - -
Mtr3g1338 194 PANTHER - 1 64 - -
Mtr3g1338 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Mtr3g1338 194 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Mtr3g1338 194 SUPERFAMILY beta-beta-alpha zinc fingers 68 140 IPR036236 -
Mtr3g1338 194 PANTHER RAB GTPASE-LIKE PROTEIN G3A 1 64 - -
Mtr3g1338 194 PRINTS Transforming protein P21 ras signature 17 38 - -
Mtr3g1338 194 PRINTS Transforming protein P21 ras signature 40 56 - -
Mtr3g1338 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Mtr3g1338 194 SMART rab_sub_5 17 129 - -
Mtr3g1338 194 Pfam C2H2-type zinc finger 118 143 - -
Mtr3g1338 194 Pfam C2H2-type zinc finger 70 92 - -
Mtr3g1338 194 Gene3D - 7 96 IPR027417 -
Mtr3g1338 194 SMART c2h2final6 70 92 IPR013087 -
Mtr3g1338 194 SMART c2h2final6 118 140 IPR013087 -
Mtr3g1338 194 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1338 Mtr-Chr3 24468650 24470422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1338 70 140 C2H2 Transcription Factor Family AT5G61470 38.028 6.78e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g1338 Ras 7.4e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1338 K07904 - mtr:MTR_4g073310 138.272