Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1334 ATGGAGAAAGTAGACTCTGAAATCATCCCTATGCCTTTCCCTCCTTACCGTCGATCTCACTTCCGCAGCCATACTTACACCACCCTTCTCCGTATTCTCACCCACCTTTCTTCTTCCACCGTTTCAACTCAACAACAACCCCTCAACGTTCCTGATAATTGCAATGTTGGAATGGGGCAAGAAAACCAGGAAAAGGAGACTGAGAACTCTGAGTTAAAAGTTGGTGCTGATGTCAAGGATCCCAAGGGTCCAATACCCTTGAAGGAAATACATGATGTCCATGAGACCATTGAAAGTGTTGGAGACATGGGCAGGGATTTGAGTGCCAATGCTATGGTCCTAGATGATGCAGCAGAATTTCTTATGGGAGTAGATGAACCATCTACACAAACATATGGTTTTCATTTGGAACAGATGATAATGGACGAGTTGGAGCTTGTTGTGAAAGGGGCTGAAGATCCTGTTTGTGATGATAGTTTAATCCCCCTGAACTGCGAGAAACAGAATAGCGGCAGTGAAGTTGATTTGATGGATTACCGAGTAGAACATGTTGAACATCTGTGTTCTGGTACAAACACGTCTGAAAGTGTAAGTGAGGTGCAGTCGCAAGTACAAGGGGAGCTTAATCAACTTGACTCGGAAGGCTTTCATGTGTCCGAGTCAAGAAAGGAACAAGCTTCTGACTCCGTGATTAATAGTACATCTAGTATAAACAATGAAAGACAACAAAAGGAAACAGAATCGGTAACACTGGTTTTTCCTCTAGTGGGATCTCTTCCTACTATTCAAGAGGGTGAATTTGAGAAGGAAGAACAGTATGGTCATAAGGTTGATGAAGCAACTCATAGTTCTTTAGATCTTGATACGAATATTGAAGCGTTGAATATGACAGAAGATGGTGGATTGCTGGATTCTACAATTATGAAAGATAAATGTGAAACACAAAATCAAGAGAAATCAGAGACGTTAATTTATGTGAAAAATACAACAAATTCTTCCGATATTCTGCTCGACGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGAAATTTCAATGGATGGAAACACATTTGATGTGTCTTCTGCAGATGCTATAGTTTCAGAACAGAGGAAATTGGATGAGATTGAGAAACCCGGGAGTTCATTTGAAAACACGTCTTCTCCTTTCAATACGGGTATCTCCTTTCAATGCTTTCCATCTAATCTCTTTATGGAAAATGCAATTCAAGATACACCAATTTTAACCAAAAATCAAGTCTTGCGCAAAGGATTCATGGAAGAAACCTCTCACGGGAACTTGTCTGTAGTACAGCAGATTGTTGATGCCAGCAGAAAGGAACAAGGTGGTCCTGATCCTAAGAAGAAAAACAAAAAGCAGATGGTTGATGCCAGTGGGAGCAAACGTGGTCCTGGTTCTCAGGAGAAGAAAACTAGAAAGAGGAAGAAGTATCGAAAGAACAGAGCAGAAAAGAACAGAGAGCTAGGTGTTAAAAGGCCAAAATTGGATCCAGAACAAAAACCAAAACCTAAACAATGTCGCCATTATATGAATGGAAGATGCCATAAGGGGGACGAGTGCAATTTCTCACATGATGCTATTCCTTTAACAAAGTCCAAGCCATGTGTTCACTATGCCCATCATCGCTCTTGTATGAAAGGGAATGATTGTCCATATGATCATGACCTTTTCAATTATCCTTGTTCCAATTTTGTCTCTAAAGGCTCCTGTTATAGAGGCGATGCTTGTCTGTTTTCACACCAGGTGCAAACCAGCCAAGATATACCTACGGCTACAAATGCTTGCAAACCAGAGTTAAAGTCTTCTCTTTCGTCAGGAAATACAAATTTCAGTACACTACTGAATAATCATGGCACTGGTTCTGTCCAACAAAGCAACTCCAATTCTAAGGGAATTTATTCACACACCAATGTAGAACATAAGGTGACAGACGTTTCAAAGACAAAGCCTACATCAGCACCCAAAGGAATTAGATTTATAAATGTTGCTAACTTATCACCTAGTACACCAAAACAAGGCACGGTACAACCAAACAAGGGAAATCTTGTCCACGGTGGAACATGTGAAGATAAAGGTCAAAATAGTGCGGAAATTTCTAAAAAGATTCCAGCTGTCATGCCTAAGGGAGTCAACTTTCTTTCTTTCGGCAAAGGTTCTGTTTGCAGTTTTAAACGTTCTATTCAATCCACTGCACAAGAAATGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTCTCTGAACATTCAGTTTCACTGCTGAATAAGGATGATCATGGAAAAGCTATTGACATAACTGCACAAAATTTACCACAGACTGCGCTATTCTCACATGAGATTTCAGACAAAAACCAATCCATGGCAGAACGAATGAAATCAAGGTTTCTGGGGAAAGATTCAACCGATGATTCTTTGAGGGATCACAACCATTGTAAATCAGTTCAAGAGGTAAATAAGGCATCTGATAATTCTCAGGCTTCAACTGTGACCTCAGCTACGCTTCTTGCTAGTCCCTTCGTTTCACTTCAATCCTCAGAAGGCCTAGTATCTGGATGTCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCATTTCAACTTTAGCTTTTGCAGCGGAGCATGAATCAAATATTAAGATGAAATGCCCTACTGGTGCTTTACCTGTATGA 2691 0.4047 MEKVDSEIIPMPFPPYRRSHFRSHTYTTLLRILTHLSSSTVSTQQQPLNVPDNCNVGMGQENQEKETENSELKVGADVKDPKGPIPLKEIHDVHETIESVGDMGRDLSANAMVLDDAAEFLMGVDEPSTQTYGFHLEQMIMDELELVVKGAEDPVCDDSLIPLNCEKQNSGSEVDLMDYRVEHVEHLCSGTNTSESVSEVQSQVQGELNQLDSEGFHVSESRKEQASDSVINSTSSINNERQQKETESVTLVFPLVGSLPTIQEGEFEKEEQYGHKVDEATHSSLDLDTNIEALNMTEDGGLLDSTIMKDKCETQNQEKSETLIYVKNTTNSSDILLDEGDLEEGEISGEISMDGNTFDVSSADAIVSEQRKLDEIEKPGSSFENTSSPFNTGISFQCFPSNLFMENAIQDTPILTKNQVLRKGFMEETSHGNLSVVQQIVDASRKEQGGPDPKKKNKKQMVDASGSKRGPGSQEKKTRKRKKYRKNRAEKNRELGVKRPKLDPEQKPKPKQCRHYMNGRCHKGDECNFSHDAIPLTKSKPCVHYAHHRSCMKGNDCPYDHDLFNYPCSNFVSKGSCYRGDACLFSHQVQTSQDIPTATNACKPELKSSLSSGNTNFSTLLNNHGTGSVQQSNSNSKGIYSHTNVEHKVTDVSKTKPTSAPKGIRFINVANLSPSTPKQGTVQPNKGNLVHGGTCEDKGQNSAEISKKIPAVMPKGVNFLSFGKGSVCSFKRSIQSTAQEMILKLPQSVNFGFSEHSVSLLNKDDHGKAIDITAQNLPQTALFSHEISDKNQSMAERMKSRFLGKDSTDDSLRDHNHCKSVQEVNKASDNSQASTVTSATLLASPFVSLQSSEGLVSGCHKQASNLGQRALISTLAFAAEHESNIKMKCPTGALPV* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1334 896 ProSiteProfiles Zinc finger C3H1-type profile. 536 564 IPR000571 GO:0046872
Mtr3g1334 896 MobiDBLite consensus disorder prediction 225 246 - -
Mtr3g1334 896 MobiDBLite consensus disorder prediction 489 514 - -
Mtr3g1334 896 ProSiteProfiles Zinc finger C3H1-type profile. 507 534 IPR000571 GO:0046872
Mtr3g1334 896 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 508 532 IPR000571 GO:0046872
Mtr3g1334 896 SUPERFAMILY CCCH zinc finger 566 593 IPR036855 GO:0046872
Mtr3g1334 896 SMART c3hfinal6 536 563 IPR000571 GO:0046872
Mtr3g1334 896 SMART c3hfinal6 565 589 IPR000571 GO:0046872
Mtr3g1334 896 SMART c3hfinal6 507 533 IPR000571 GO:0046872
Mtr3g1334 896 MobiDBLite consensus disorder prediction 474 488 - -
Mtr3g1334 896 MobiDBLite consensus disorder prediction 55 84 - -
Mtr3g1334 896 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 221 893 IPR045124 GO:0003723|GO:0045892
Mtr3g1334 896 PANTHER PROTEIN SUPPRESSOR OF SABLE 221 893 - -
Mtr3g1334 896 ProSiteProfiles Zinc finger C3H1-type profile. 567 590 IPR000571 GO:0046872
Mtr3g1334 896 Gene3D - 498 563 - -
Mtr3g1334 896 Coils Coil 474 494 - -
Mtr3g1334 896 MobiDBLite consensus disorder prediction 444 514 - -
Mtr3g1334 896 MobiDBLite consensus disorder prediction 447 463 - -
Mtr3g1334 896 MobiDBLite consensus disorder prediction 217 246 - -
Mtr3g1334 896 SUPERFAMILY CCCH zinc finger 508 532 IPR036855 GO:0046872
Mtr3g1334 896 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1334 Mtr-Chr3 24417341 24425080 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g1334 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1334 - - mtr:MTR_3g053340 1516.52