Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1333 ATGGAAGAAGAAGTCATTTGCAATGATGCTATAGGAAATTCTAGGGTTGTTGAAGTTCCACATTCTTCTTCTTCTCGAGTCATGTCTTTTAATGGAAAACGACTAATTATGGATGAGGTTGATTTCTTTGCAGAGAAGAAAATGAGTCCAGTTAATGACCTAACACTACACCAAATGGAGCATCATCACGTAGATACTAGTTTAGATCTTCTCACAAAGATTTCTCCTAGCAACAAACTGGATGATAGAGAATATTCCAATGCAAGGAACGAAAATGAGTATGCTGTTGTGGTAGCTAAATTGCACGAAACGAATGCTGAAAATCAACGTTTAAGAGAGCTAATTGATAGGCTTAGAATTGATCACAATGCCCTAGAAGAGCATATTATGCAGCTGAAGCAGAAACAGAATAAACATGAGACTAATGATGAAGCAACTGAAGAAAAGAATGGTATGAATATGATTCTAAGGCCATTCTTGAACATGGGTGAACCTTCACAAGAGAGAAAAAACATGGTTGACTTGATGGAGTGCGATAAAAAGAGTACTCAAAAGTTATGCAACAATGGAGTTATACAAGAGAAGACTGAAAGGGAAGAAGATCATCATGAGAATTCACCATCTAATAAAGCATTATCAAACCAAGTTCCAAGACTGAATTCTTTCAATGGTGTTGATGATCAAGCATCAGAATCAATGATCAAGAAAGCTCGTGTCTCGGTTAGAGCAAGATCGGAAGCTAATATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGAAACCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGGACTGCTTGTCCAGTTCGGAAGCAAGTTCAAAGATGTGCTGAAGATAGAAGTGTTTTGGTAACAACATATGAAGGACAACATAACCATGCTCTACCACCAACAGCAAAAGCAATGGCATCAACAACAACATCAGCAGCATCAATGCTACTTTCAGGACCAATGACAAGTGTAGATGGTTTAATAAATCCAACAATATTAGAAAGTGGATCACTCCCTTGTTCACACACCATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACTATCACGTTAGATCTAACTGAAGAAGCTATCAATAATTCCTCACAAAAACAACTACAACAAGGACAGTTTAACCTCCTTCATCCCTTTTTGGCTCAGAAATTTATGTCAGGTTCAAATATTTTTGGAATGGAAAATGCTTCATTTGTTGATACAGTTAGTGCTGCAACAGCTGCTATGACTTCTGACCCGAAATTCACTTCTGCTTTAGTTGCTGCCATAACTTCCATCGTTGGAAGTAATTCAAATCCAAATAATAATGGTACTACCAATGGTACAAGTGGAGACCAGAATTGCAATAAATCATAA 1407 0.3781 MEEEVICNDAIGNSRVVEVPHSSSSRVMSFNGKRLIMDEVDFFAEKKMSPVNDLTLHQMEHHHVDTSLDLLTKISPSNKLDDREYSNARNENEYAVVVAKLHETNAENQRLRELIDRLRIDHNALEEHIMQLKQKQNKHETNDEATEEKNGMNMILRPFLNMGEPSQERKNMVDLMECDKKSTQKLCNNGVIQEKTEREEDHHENSPSNKALSNQVPRLNSFNGVDDQASESMIKKARVSVRARSEANMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRSVLVTTYEGQHNHALPPTAKAMASTTTSAASMLLSGPMTSVDGLINPTILESGSLPCSHTMATLSASAPFPTITLDLTEEAINNSSQKQLQQGQFNLLHPFLAQKFMSGSNIFGMENASFVDTVSAATAAMTSDPKFTSALVAAITSIVGSNSNPNNNGTTNGTSGDQNCNKS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1333 468 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 17 452 IPR044810 GO:0003700
Mtr3g1333 468 Gene3D WRKY domain 235 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr3g1333 468 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1333 468 Coils Coil 101 149 - -
Mtr3g1333 468 MobiDBLite consensus disorder prediction 196 215 - -
Mtr3g1333 468 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 17 452 - -
Mtr3g1333 468 MobiDBLite consensus disorder prediction 446 468 - -
Mtr3g1333 468 Pfam WRKY DNA -binding domain 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1333 468 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr3g1333 468 SUPERFAMILY WRKY DNA-binding domain 243 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1333 Mtr-Chr3 24411144 24414950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1333 34 447 WRKY Transcription Factor Family AT1G62300 41.126 7.02e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr3g1333 WRKY 2.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1333 - - cam:101500503 516.153