Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1327 ATGAACAACAACTCTTCATTCGGTTCTATTCCTCCTTCTCCCGCTTCTTCCAACTCGTCCTCGATGGCTTCTTCTGAACAACTCGTTCTCGAACTCAGCAATCCCGAACTCCGTGAAAACGCTCTTCTCGAACTCTCCAAGAAGAGGGAGCAATTTCAAGATCTCGCCCCATTGCTATGGAATTCATTTGGTACTATTGCAGCACTACTGCAGGAAATTGTTTCAATATACCCTGTTTTGTCTCCTCCCAACCTCACTCCAGCACAATCAAATCGAGTGTGCAATGCTCTTGCCCTGCTCCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTGAATGCGCACATTCCTCTGTATTTGTATCCGTTCCTGAACACAACAAGCAAATCCAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCACTAGTGAAGGTTGATGATACTGAGGTTATTAGTTTTCTGCTTTCGACTGAAATAATTCCCCTGTGCCTGCGCACTATGGAGATGGGGAGTGAGCTCTCCAAAACAGTTGCAACGTTTATTGTTCAAAAGATTCTGTTAGACGATGTGGGCTTGGACTATATTTGTACTACAGCTGAGCGCTTTTTCGCTGTTGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGTCTGTCAGATAACCCGAGGGCTTGTGATGCATTAAGAAGCTGTCTTCCTGACATGTTAAGGGATGCTACATTCAGCAGCTGCCTTCGTGAGGACCCAACAACTAGGAAGTGGCTGCAACAACTGATTCACAATGTTGGAGGGAATCGGGTTCCTGCACTGCAAGGTGGAGGAGGTTTTGATCATCTAATGGTGAATTGA 921 0.4593 MNNNSSFGSIPPSPASSNSSSMASSEQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLIHNVGGNRVPALQGGGGFDHLMVN* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1327 306 Pfam Cell differentiation family, Rcd1-like 28 286 - -
Mtr3g1327 306 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g1327 306 SUPERFAMILY ARM repeat 30 260 IPR016024 -
Mtr3g1327 306 PANTHER BNAA05G20110D PROTEIN 18 303 - -
Mtr3g1327 306 Gene3D - 17 287 IPR011989 -
Mtr3g1327 306 PANTHER UNCHARACTERIZED 18 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1327 Mtr-Chr3 24311980 24319424 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Mtr3g1327 Rcd1 1e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1327 K12606 - gmx:100792784 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1327 3 24311980 24319424 Mtr5g3311 5 41992908 42010185 PCT