Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1319 ATGTCAAGTGGAAGGAAAAGTCGAGGTCGCCAAAAGATTGAGATCAAAAAAATTAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTATGCGGTGCAGATGTTGCTCTCATTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCACCCCAATCTTGATGCGGTCATAGATCGTTATCTCTCTCGGGTCCCACCCCAAAACTATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAAACCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGTTGATCCACTTGCGTAAGACGGTCGAGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCAGGCCCAACTTGAATTATTCAAGAAGGCTCTAGATGAACTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAAGGTGCTCCCACTCAAACCTTTCCGTTTTTTGTTGGAAGCAATTCATCCTTTAACATGCCTCTCCATCATCAACTAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTTGTTTGGCTTCAACAATATAGGGGGAGGAGGTGGAAATGGACCCTCCTGA 705 0.4596 MSSGRKSRGRQKIEIKKISNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNLDAVIDRYLSRVPPQNYGTMQFIEAHRSANVRELNTQLTQTNQLLDIEKKRAEELIHLRKTVETQFWWAGPIDGMNQAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTFPFFVGSNSSFNMPLHHQLNPPQAQMLPAQFYQNPMLQPHLFGFNNIGGGGGNGPS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1319 234 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr3g1319 234 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr3g1319 234 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mtr3g1319 234 PANTHER MADS BOX PROTEIN 7 188 - -
Mtr3g1319 234 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 188 - -
Mtr3g1319 234 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr3g1319 234 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Mtr3g1319 234 Coils Coil 99 123 - -
Mtr3g1319 234 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr3g1319 234 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr3g1319 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr3g1319 234 Gene3D - 88 171 - -
Mtr3g1319 234 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1319 Mtr-Chr3 24195106 24195810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1319 5 223 Type I MADS-box Gene Family AT5G60440 48.000 2.72e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1319 SRF-TF 1.3e-25 No_clan