Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1318 ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGTCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCCTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGGGTCCCACCCCAAAACAATGGTACCATGCAATTTATTGAGGCTCACCGAAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAAATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGCTCAACGGCCGAGACTCAATTTTGGTGGGCTGGTCCCATTGA 420 0.4929 MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSHLLNGRDSILVGWSH* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1318 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mtr3g1318 139 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Mtr3g1318 139 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g1318 139 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mtr3g1318 139 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 129 - -
Mtr3g1318 139 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mtr3g1318 139 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mtr3g1318 139 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Mtr3g1318 139 PANTHER MADS BOX PROTEIN 8 129 - -
Mtr3g1318 139 Coils Coil 99 119 - -
Mtr3g1318 139 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mtr3g1318 139 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mtr3g1318 139 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1318 Mtr-Chr3 24181205 24181624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1318 5 123 Type I MADS-box Gene Family AT5G60440 66.942 7.82e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g1318 SRF-TF 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1318 - - mtr:MTR_1g106070 228.409