Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1301 ATGGAACACATGACAAATATTGTTGACGCAGTAAATGATGAAAATGTGTTCTTTGGTATGATAGAAAGAGGCGGTGGCGGAGAGAGTGGTAGTAGTGGTGGTGGTGATGAGGCGAATTTGAAAAAGGGTCCTTGGACAACAGGAGAGGATACAATTTTGATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAAAAATATAGGTTTAAATCGTTGTGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAGACCCAACTTGAAGAAAGGTGCATTTTCTCATGAAGAAGAGAAAATCATTGTTGAACTCCATGCTCAATTTGGTAACAAATGGGCTCGAATGGCTGCTTTGTTACCTGGAAGAACAGACAATGAAATAAAGAACTACTGGAACACAAGAATCAAACGTCGTCAAAGACAAGGTCTTCCTCTCTATTCAGACGAACATGATCGTCCCAACACACCAACAACACCTTCACAATGTGTCACACCAACAGGAACAAACCCTAACAACATTACACCAAAGTTTGAGTTTTTCAATCAAAACCACCATCAATATCAACAACAACAACAACAACATCAACACCTTCACCCTTTATCCCCAACACCAACTCATCATCAGTCTCCTCTCTCTTCACCACTCCAACATAGACAACAACGACAACATTCTTATTCTCCTCACACATTCATAGAGACTTCACCTACACCATTGTCATCTTCACCTTCACCTCTCTCTTTCACTTTCCAAAGACCTGCACCACTCTTATCTACACCTTTTCGCTTCAAACGTTATCGTTCCAGTCCCAACTTTAGTCTTCAAGTCCCTTCTGTAACACAAAATTGTGCTTCACTCCATGATCCTTCTTTAACCTCTCATCAAGATAGTTTTAGGTTTCCAATTCAATACAACTCAAGTTTTTCTCAATACTTCCATAGTCCCATGTTCGAATCCGACCAAGGAGTTTCTTCATCGTCTTTACCTTTCTCCACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGACTATCATCAGAGCAAGATGTTAATGTTAACAATATTGAATTCAATGATCCTAATTCTTTTCAGACCAATAATAGTGGCTTAATGGGAGACCTTTTAATGGAAGCACAAACACTAGCATCTGGTCAAAATTCAAAGAAAAGAAATTACTTAAGCTTAAATGAAGGAAATGATATGTTTAATGGTTTCCAAAGCCTAGATGATTTCCCACTTAGCTCTCTTTATTGGTCTTCTAATTCAGGACAAAAACCAAAGGAAGAAGCACCAGACCTAAGCAAATTTATGAATGATGACATCTCAACAATGCTAACTATGATGCCTTCTTCAACAATGCAAATTCAGGATTGGAATAATAATAACAATAACAATGCATCAGAAGTAACCAACGTTCAGTCTTCTAGTGGTGTGGTGATGGCAGATGAAAATTTTGGACTTGATATCAAGCCTATAGCTTCATTGTTTCCTCTCACAAACACAACAAATAATAGTAATGATGATAATAATAGTGAAAACAACAGTTTCTACACTTGGGGCAATTTACCTGAACTCTGTTGA 1593 0.3779 MEHMTNIVDAVNDENVFFGMIERGGGGESGSSGGGDEANLKKGPWTTGEDTILIDYVTKHGEGNWNAVQKNIGLNRCGKSCRLRWANHLRPNLKKGAFSHEEEKIIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDRPNTPTTPSQCVTPTGTNPNNITPKFEFFNQNHHQYQQQQQQHQHLHPLSPTPTHHQSPLSSPLQHRQQRQHSYSPHTFIETSPTPLSSSPSPLSFTFQRPAPLLSTPFRFKRYRSSPNFSLQVPSVTQNCASLHDPSLTSHQDSFRFPIQYNSSFSQYFHSPMFESDQGVSSSSLPFSTKLELPSNQYSRLSSEQDVNVNNIEFNDPNSFQTNNSGLMGDLLMEAQTLASGQNSKKRNYLSLNEGNDMFNGFQSLDDFPLSSLYWSSNSGQKPKEEAPDLSKFMNDDISTMLTMMPSSTMQIQDWNNNNNNNASEVTNVQSSSGVVMADENFGLDIKPIASLFPLTNTTNNSNDDNNSENNSFYTWGNLPELC* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1301 530 CDD SANT 44 89 IPR001005 -
Mtr3g1301 530 Gene3D - 41 94 - -
Mtr3g1301 530 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
Mtr3g1301 530 CDD SANT 97 138 IPR001005 -
Mtr3g1301 530 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Mtr3g1301 530 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Mtr3g1301 530 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Mtr3g1301 530 MobiDBLite consensus disorder prediction 146 250 - -
Mtr3g1301 530 MobiDBLite consensus disorder prediction 506 530 - -
Mtr3g1301 530 Gene3D - 97 143 - -
Mtr3g1301 530 MobiDBLite consensus disorder prediction 22 42 - -
Mtr3g1301 530 SMART sant 41 91 IPR001005 -
Mtr3g1301 530 SMART sant 94 142 IPR001005 -
Mtr3g1301 530 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 501 - -
Mtr3g1301 530 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Mtr3g1301 530 SUPERFAMILY Homeodomain-like 39 136 IPR009057 -
Mtr3g1301 530 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Mtr3g1301 530 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 501 - -
Mtr3g1301 530 MobiDBLite consensus disorder prediction 156 250 - -
Mtr3g1301 530 MobiDBLite consensus disorder prediction 506 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1301 Mtr-Chr3 23968865 23971674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1301 20 508 MYB Transcription Factor Family AT4G26930 38.182 1.80e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g1301 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1301 - - lja:Lj6g3v0869180.1 606.29