Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1300 ATGGAACACATGACAAATATTGTTGATGCGGTAAATGATGAAAATGTATTCTTTGGTATGATGGAAAGAGGCGGTGGCGGAGAGGGTGGTGGTTGTAGTGGCGATGGTGATGAGGCGAATTTGAAAAAGGGTCCTTGGACAACAGGAGAGGATACAATTTTGATAGATTATGTAACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAAAAATACAGGTTTGAATCGTTGTGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAGACCCAATTTGAAGAAAGGTGCATTTTCTCATGAAGAAGAGAAACTCATTGTTGAACTCCATGCACAATTTGGTAACAAATGGGCTCGAATGGCTGCTTTGTTACCTGGAAGAACAGACAATGAAATAAAGAACTACTGGAACACAAGAATCAAACGTCGGCAAAGACAAGGTCTTCCTCTCTATTCAGACGAACATGATCTTCCCAACACACCAACCACACCAACAACACCTTCACAATGTGTCACACCAACAGGAACAAGCCCTAACAACATTACACCAAAGTTTGAGTTTTTAAATCAAAACAACCACCAATATCAACAACAACATCAACATCAACACCTTCACCCTTTATCCCCAACACCAACTCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGACAACAACGACAACATTCTTATTCTCCTCACACATTCATAGAGACTTCACCTACACCATTTTCATCTTCACCTTCACCTCTCTCTTTCACTTTCCAAAGACCTGCACCACTCTTATCTGCACCTTTTCGCTTCAAACGTTATCGTTCCAGTCCCAACTTTAGTCTTCAAGTCCCTTCTGTAATACAAAATTGTGCTTCACTCCATGATCCTTCTTTAACCTCTCATCAAGATAGTTTTAGGTTTCCAATTCAATACAACTCAAGTTTTTCTCAATACTTTCATACTCCCATGTTCGAATCCGATCGAGGAGTTTCTTCATCGTCTTTACCTTTCTCCACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGACTATCATCAGAGCAAGATGTTAATGTTAACAATATTGAATTCAATGATCCTAATCCTTTTCAAACCAATAATAGTGGCTTAATGGGAGATCTTTTAATGGAAGCACAAACACTAGCATCTGGTCAAAATTCAAAGAAAAGAAGTTACTTGAGCTTAAATGAAGGAAATGATATGTTTAATGGTTGCCAAAGCCTAGATGATTTCCCACTTAGCTCTGTTTATTGGTCTTCTAATTCAGGACAAAAACTAAAGGAAGAAGCACCAGACCTAAGCAAATTTATGAATGATGACATCTCAACAATGTTAACTGTGATGCCTTCTTCCACAATGCAAATTCAGGATTGGAATAATAATAACAATAACAATGCATCAGAAGTAACCAACGTTCATTCTTCTAGTGGTGTGGTGATGGCAGATGAAAATTTTGGACTTGATTTCAAGCCTATAGCTTCATTGTTTCCTCTCACAAACGCAACAAATAATAGTAATGATGATAATAATAATAATAATAATAATAATGAAAACAACGGTAGCTATACTTGGGGAAATTTACCTGAACTCTGTTGA 1617 0.376 MEHMTNIVDAVNDENVFFGMMERGGGGEGGGCSGDGDEANLKKGPWTTGEDTILIDYVTKHGEGNWNAVQKNTGLNRCGKSCRLRWANHLRPNLKKGAFSHEEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDLPNTPTTPTTPSQCVTPTGTSPNNITPKFEFLNQNNHQYQQQHQHQHLHPLSPTPTHHHSPLSSPLQHRQQRQHSYSPHTFIETSPTPFSSSPSPLSFTFQRPAPLLSAPFRFKRYRSSPNFSLQVPSVIQNCASLHDPSLTSHQDSFRFPIQYNSSFSQYFHTPMFESDRGVSSSSLPFSTKLELPSNQYSRLSSEQDVNVNNIEFNDPNPFQTNNSGLMGDLLMEAQTLASGQNSKKRSYLSLNEGNDMFNGCQSLDDFPLSSVYWSSNSGQKLKEEAPDLSKFMNDDISTMLTVMPSSTMQIQDWNNNNNNNASEVTNVHSSSGVVMADENFGLDFKPIASLFPLTNATNNSNDDNNNNNNNNENNGSYTWGNLPELC* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1300 538 MobiDBLite consensus disorder prediction 510 538 - -
Mtr3g1300 538 SMART sant 42 92 IPR001005 -
Mtr3g1300 538 SMART sant 95 143 IPR001005 -
Mtr3g1300 538 Gene3D - 98 144 - -
Mtr3g1300 538 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Mtr3g1300 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Mtr3g1300 538 MobiDBLite consensus disorder prediction 147 252 - -
Mtr3g1300 538 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Mtr3g1300 538 Gene3D - 42 95 - -
Mtr3g1300 538 MobiDBLite consensus disorder prediction 510 532 - -
Mtr3g1300 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Mtr3g1300 538 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 532 - -
Mtr3g1300 538 CDD SANT 45 90 IPR001005 -
Mtr3g1300 538 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Mtr3g1300 538 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Mtr3g1300 538 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 532 - -
Mtr3g1300 538 SUPERFAMILY Homeodomain-like 40 137 IPR009057 -
Mtr3g1300 538 MobiDBLite consensus disorder prediction 157 252 - -
Mtr3g1300 538 CDD SANT 98 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1300 Mtr-Chr3 23961112 23963824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1300 20 511 MYB Transcription Factor Family AT4G26930 36.800 1.14e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g1300 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1300 - - lja:Lj6g3v0869180.1 596.66