Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1289 ATGGTTGAGTTGGACATCCAGATCCCAACTGCTTTCGATCCATTCGCTGACGCCATAGAATCGGATGCCCCCGGAGGAAAAGAGTATGTTCATATACGCATTCAGCAAAGAAATGGAAAAAAGAGCTTAACAACTGTTCAAGGGCTGAAAAAAGATTACAGCTACGAGAAAATTCTCAAGGATCTTAAGAAAGAGTTCTGTTGCAACGGGAATGTTGTGCAGGATAAAGAACTTGGTAAAATTATCCAACTACAAGGTGATCAGAGGAAGAAGGTTTCTCAGTTTTTGGTTCAAGCCGGTCTTGTGAGGAAGGATCAGATCAAGATTCATGGTTTTTGA 339 0.413 MVELDIQIPTAFDPFADAIESDAPGGKEYVHIRIQQRNGKKSLTTVQGLKKDYSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQAGLVRKDQIKIHGF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1289 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Mtr3g1289 112 PANTHER BNAA03G11670D PROTEIN 1 112 - -
Mtr3g1289 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Mtr3g1289 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
Mtr3g1289 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Mtr3g1289 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Mtr3g1289 112 Gene3D - 1 112 - -
Mtr3g1289 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Mtr3g1289 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1289 Mtr-Chr3 23766680 23768049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1289 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 86.607 3.52e-70 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1289 K03113 - csv:101202908 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1289 3 23766680 23768049 Mtr5g3286 5 41728395 41730025 PCT