Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1249 ATGACTTTTCCAATGAACAAGAGGCGAAGAATTTCTGAAAAAAATTATTCCAATGCATTCATATGCCCTCCTCCATCAAACAAAGAAACAGGAAGCATTTTCTTCAAGACTCGTATTTGTCATAAGTTCAAGTTTGGTAATTGTCCGAAAGGTGAACATTGTACCTATGCTCACGGGGTTGGTGAGATTAGGCAGCCACCGGCGAATTGGAAGGATCTAGCTGGTCCTCGCAATGAGGAATGGATGCAGTTTCTGGATGATGATGAGAAAATCATTCACAAGATGGGGCTATGCAAGAAATACTACAATGGTGAGGAATGTCCTTATGGTGATACATGTATTTTTCTTCATAGGCTTAGGGAAGATTCTTGGAAATCAAGAGAGGCCTGTGCATTAAGCATTGGAAGTATCGGAGATGGTTCTAATAATTTGGAAGGAAATAGGTCTGTGAACAAGCCAGCAAGGGGCACTTACTGGAAGATTAAGCTGTGTCCCATTGGGGATGACTGTCACTACGCTTATGGAGAAGCAGATGTCTTACCAGTTTCGGCCAATGATGCAACTACCAGCATCCCAGCAAGTCTAGGTATTGCAAAGGAAGTGGAGCAAGCTAAGAAGAAGCCTTTACTTTGGTGGAAATTAAACACGAAGATCAATACTATATATGCTGATTGGATTGATGATTCATCTCTTGTTTTTCCCAACTTGCCAAGTGCAGAGGAGATCTAA 729 0.4156 MTFPMNKRRRISEKNYSNAFICPPPSNKETGSIFFKTRICHKFKFGNCPKGEHCTYAHGVGEIRQPPANWKDLAGPRNEEWMQFLDDDEKIIHKMGLCKKYYNGEECPYGDTCIFLHRLREDSWKSREACALSIGSIGDGSNNLEGNRSVNKPARGTYWKIKLCPIGDDCHYAYGEADVLPVSANDATTSIPASLGIAKEVEQAKKKPLLWWKLNTKINTIYADWIDDSSLVFPNLPSAEEI* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1249 242 Gene3D - 27 66 - -
Mtr3g1249 242 SUPERFAMILY CCCH zinc finger 92 121 IPR036855 GO:0046872
Mtr3g1249 242 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Mtr3g1249 242 SMART c3hfinal6 34 60 IPR000571 GO:0046872
Mtr3g1249 242 SMART c3hfinal6 94 119 IPR000571 GO:0046872
Mtr3g1249 242 ProSiteProfiles Zinc finger C3H1-type profile. 97 120 IPR000571 GO:0046872
Mtr3g1249 242 Gene3D - 86 184 - -
Mtr3g1249 242 PANTHER CCCH ZINC FINGER/TIS11-RELATED 4 231 IPR045877 GO:0003729
Mtr3g1249 242 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 4 231 - -
Mtr3g1249 242 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 117 IPR000571 GO:0046872
Mtr3g1249 242 SUPERFAMILY CCCH zinc finger 33 65 IPR036855 GO:0046872
Mtr3g1249 242 ProSiteProfiles Zinc finger C3H1-type profile. 34 61 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1249 Mtr-Chr3 23065451 23067208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1249 36 122 C3H Transcription Factor Family AT1G68200 34.091 2.36e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g1249 zf-CCCH 0.0002 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1249 - - mtr:MTR_3g050390 522.702