Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1247 ATGGAAAATGCAAATGCAAATGCAAATATTTCAGTTTGGTGGGACATTGAAACCTGTCAATTTCCAACCAATAATTTTGATGACATTTACTACATTGCTAAGAATATTCACTTAGCTCTCTCCAATGTCAACCTTCATGGCAGACTAACCATTTCTGCTTATGGAAACTCCGATCTCATCCCTAGTAAGGTTCGACGCGCACTTTATATCATGGGAACCTCCCTCCGTCTCCTCCCCACCAAAGGAGGTGTCTACAATGGGATCATGCCGGATTTGTTAATATGGGCGTTACAGAATCCTCCCCCTGCCAATATTCTTTTGATTTCCAGTGATGATAGTTTCTCAAGTTTTCTTCATGAATTTTCTATGCAAGGGTTCAACATCATTCTTTCTGCACCTTCACCGGTTGATGCATCCCTCGCCGCAGCTGCCAATATATTTTGGCATTGGCCCACATACATTTCTTGGAAACTCCTTAACGCAATTCAGCAGATGACTATGGAAAATGCAAATACAAATATCTCAGTTTGGTGGGACGTTGGAAATTGCCAAATTCCAACAAACTTTGACAGTATTGACTGCATTGTTAATAATATTCGATTAGCTCTCTTAAAAGCCAACCTTCGTGGCAAACTATCCATTTCTGCTTATGGAAACACAAATCTCATCGCTAGTGGGCTTCAACATGCACTCTCCACCGCAGGCATCCCCCTATGTCACGTCCCCAGTGGAGATGTGTACAAAGTCATCATGTTTGATATGTTAAAGTGGGTTTTGAAAAATCATGCCCCTGCAAGTATTATGTTGCTTTCTAGTGATGTTAGGTTCTCAAAACTTCTTTATGATCTTTCTGTAAGAAGGTATAACATTCTTCTTTCTGCACCTTCAAAAGTTTGTGCATCACTCGCCTCCACTGCCAATGTCATTTGGCTCTGGTCAACACTCATTTCTGGTGGGAGTCCTCTAAAAACTGCTGAACAGTTGTCTGCATCATTGCTAGACCAAGTCCAGGACGGGGAAAGCAACATCTAG 1032 0.4167 MENANANANISVWWDIETCQFPTNNFDDIYYIAKNIHLALSNVNLHGRLTISAYGNSDLIPSKVRRALYIMGTSLRLLPTKGGVYNGIMPDLLIWALQNPPPANILLISSDDSFSSFLHEFSMQGFNIILSAPSPVDASLAAAANIFWHWPTYISWKLLNAIQQMTMENANTNISVWWDVGNCQIPTNFDSIDCIVNNIRLALLKANLRGKLSISAYGNTNLIASGLQHALSTAGIPLCHVPSGDVYKVIMFDMLKWVLKNHAPASIMLLSSDVRFSKLLYDLSVRRYNILLSAPSKVCASLASTANVIWLWSTLISGGSPLKTAEQLSASLLDQVQDGESNI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1247 343 CDD PIN_limkain_b1_N_like 9 133 - -
Mtr3g1247 343 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 166 326 - -
Mtr3g1247 343 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 5 153 - -
Mtr3g1247 343 Pfam NYN domain 10 145 IPR021139 GO:0004540
Mtr3g1247 343 Pfam NYN domain 174 309 IPR021139 GO:0004540
Mtr3g1247 343 PANTHER LIMKAIN B LKAP 166 326 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr3g1247 343 PANTHER LIMKAIN B LKAP 5 153 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mtr3g1247 343 CDD PIN_limkain_b1_N_like 173 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1247 Mtr-Chr3 23016197 23019291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1247 175 326 C2H2 Transcription Factor Family AT5G61190 47.097 9.52e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1247 - - mtr:MTR_3g050240 652.899