Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1240 ATGTCACCTAGTTTCATCTTCGACCCTCCCAGTGACGAAGAAATCGAACTCTCCGAACATGATTCCGACGAATCCGATTCAGAACAATCACAACCCGAATCACAATCAGGAGAAGAATCAGACTCAGACTCAGAATCAGAACAGCGCCGCAAAGAACCGCGAGTTTCGAAGAAGAAAACACAGTCTCCATGGGACTTCACTCAATACTCTGAATCAGTTGCTGAAGAACACGCTCGCCGGAGTACAACATCAGTAGACGATAAAATCTCAGCTGTCAGACAACGCTCAGCTCCGGTCGTTGCTTTGCCCGACAGCGACGACGACAGAAGTTCCGACTCCGAAGCTGATAAACAAGAAGATTATAGACCAGAAGAAGAAGATGAAGAAGATGGTAATGCTGGTGAAAACAAGTCCTTCTTTGCTCCTTCTGCCGGAACCTCTTTCAGTGCTGATTCCTTCTTGCAACTCAATTTGTCTCGCCCTTTACTCCGGGCTTGTGAGGTCTTGGGGTATTCTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGATTGCTGTTCCGTCCAAAACGTGTGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCAAAGTATGATTAAGAGCCTTTCTCAATTTACTGATATAAGGTGTTGCCTGATTGTCGGTGGTCTGTCAACAAAGGAGCAAGAGGTTGCCTTGAGATCAAGGCCAGACATTGTTGTGGCGACTCCAGGACGTATGATAGACCATTTACGCAATTCCATGTCGGTGGATTTGGATGATCTTTCTGTTTTAATCCTTGATGAAGCAGATCGTCTTTTGGAGCTAGGATTTAGTGCTGAAATTCAGGAACTTGTTCGCGTGTGTCCCAAAAAAAGGCAGACCATGTTGTTTTCCGCAACCATGACTGAGGAGGTTGATGATCTTATTAAACTTTCCCTATCCAAACCCCTGCGCCTTTCTGCAGATCCATTGGCAAAACGGCCAGCATCCTTGACTGAGGAGGTGGTTAGACTAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACGAAGCAAGCTGCACATAGATTGAGGATTATATTTGGATTATCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTGGGAGCTTTGGAAGAATTTAGGAAGCAGCAAGTGGATTTTCTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATCATAGGTGTTCAAACAGTTATCAATTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGAAGAGCGGGATCTGCAGTCACATTTGTTACTGATAATGACCGGTCACTTCTAAAAGCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAGTGGTCTCAAGTAATTGAGCAAATGGAGGACCAAATTTCTGAAGTACTTCAAGAAGAGAGAGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCCGAAAACATGATTGCACATAAGGATGAGATTTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGATTTCGGCAAAAGCAGCAAAGGCATCATTGGATAAAGAAGATGGTTCTTCTCATAAGATGGTTAGTGCCCAGCAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATATGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCAGCTAGGGAGATGTTGGAGGATGACGAGCATGATGACAAGCCAAAAGGCAAGGGGACAGATAAGAATGAAAAGGCTGGACTGACCCTTGTTGATCTTGCGTACCGACGTGCAAAAGCAGTAAAGGCCACCAAGAGGGCATTAGATTCTGGAAAGATTATTAAGAAGCCTCAAAAGAAATCTAATAAATCTAATCCCTCGCGAAAGACTTCTTCTTCTTCAAGGACAGAAGAGATGCGGGAGTTATTCCAGACTGACATGAAGGATAAAAAGCCGAAACAGAGAGGTTCTGGAGTAGGAAAGAAGGCCCAAAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2283 0.445 MSPSFIFDPPSDEEIELSEHDSDESDSEQSQPESQSGEESDSDSESEQRRKEPRVSKKKTQSPWDFTQYSESVAEEHARRSTTSVDDKISAVRQRSAPVVALPDSDDDRSSDSEADKQEDYRPEEEDEEDGNAGENKSFFAPSAGTSFSADSFLQLNLSRPLLRACEVLGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVHAIRVLILTPTRELAAQVQSMIKSLSQFTDIRCCLIVGGLSTKEQEVALRSRPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDDLIKLSLSKPLRLSADPLAKRPASLTEEVVRLRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLGALEEFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQVIEQMEDQISEVLQEEREEMILRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEKEKKISAKAAKASLDKEDGSSHKMVSAQQAEDLKMKEKRKREREKNMPRKKRRKLEAAREMLEDDEHDDKPKGKGTDKNEKAGLTLVDLAYRRAKAVKATKRALDSGKIIKKPQKKSNKSNPSRKTSSSSRTEEMRELFQTDMKDKKPKQRGSGVGKKAQKSFKSKSRYKRK* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1240 760 MobiDBLite consensus disorder prediction 637 669 - -
Mtr3g1240 760 MobiDBLite consensus disorder prediction 12 28 - -
Mtr3g1240 760 MobiDBLite consensus disorder prediction 682 700 - -
Mtr3g1240 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 530 IPR001650 -
Mtr3g1240 760 MobiDBLite consensus disorder prediction 72 86 - -
Mtr3g1240 760 Gene3D - 110 358 IPR027417 -
Mtr3g1240 760 MobiDBLite consensus disorder prediction 1 141 - -
Mtr3g1240 760 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 302 310 IPR000629 -
Mtr3g1240 760 MobiDBLite consensus disorder prediction 598 760 - -
Mtr3g1240 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 356 IPR014001 -
Mtr3g1240 760 Coils Coil 615 635 - -
Mtr3g1240 760 Pfam Helicase conserved C-terminal domain 388 491 IPR001650 -
Mtr3g1240 760 SMART helicmild6 406 491 IPR001650 -
Mtr3g1240 760 SMART ultradead3 170 371 IPR014001 -
Mtr3g1240 760 Coils Coil 529 567 - -
Mtr3g1240 760 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Mtr3g1240 760 MobiDBLite consensus disorder prediction 42 59 - -
Mtr3g1240 760 PANTHER RNA HELICASE 54 709 - -
Mtr3g1240 760 Gene3D - 366 529 IPR027417 -
Mtr3g1240 760 Pfam DEAD/DEAH box helicase 175 345 IPR011545 GO:0003676|GO:0005524
Mtr3g1240 760 PANTHER BNAA01G17110D PROTEIN 54 709 - -
Mtr3g1240 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 511 IPR027417 -
Mtr3g1240 760 CDD DEADc_DDX27 162 357 - -
Mtr3g1240 760 CDD SF2_C_DEAD 368 500 - -
Mtr3g1240 760 MobiDBLite consensus disorder prediction 717 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1240 Mtr-Chr3 22890605 22900284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1240 151 508 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 9.87e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1240 K13181 - gmx:100791233 1023.46