Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1186 ATGGAGCTACCAAATGAAGGTGGAGAAGGATCTTCTCAAAAGAAAATGGGAAGAGGAAAAATTGAAATCAAGAGGATTGAAAACACTACCAATAGGCAAGTCACTTTTTGCAAACGACGCAATGGATTGTTGAAGAAAGCTTATGAATTATCCGTTCTTTGTGATGCCGAAGTTGCTCTTGTTGTCTTCTCCACTCGCGGTCGTTTGTATGAGTATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTAGGATCTCTAAGTCTCAAAGAACTGAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGGAAATTGAGCTGCAAAACCATAACAATTATCTACGGGCTAAGATAGCGGAACATGAGAGAGCTCAACAACAGCAACATAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCATCACAAGCATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCGCTCCAACTTGTGTGA 693 0.4012 MELPNEGGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKEIELQNHNNYLRAKIAEHERAQQQQHNLMPDQTMCDQSLPSSQAYDRNFFPVNLLGSDQQQYSRQDQTALQLV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1186 230 ProSiteProfiles K-box domain profile. 102 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g1186 230 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Mtr3g1186 230 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 SUPERFAMILY SRF-like 17 93 IPR036879 GO:0003677|GO:0046983
Mtr3g1186 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 219 - -
Mtr3g1186 230 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 12 219 - -
Mtr3g1186 230 MobiDBLite consensus disorder prediction 1 21 - -
Mtr3g1186 230 Pfam K-box region 100 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g1186 230 Coils Coil 161 181 - -
Mtr3g1186 230 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Mtr3g1186 230 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Mtr3g1186 230 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1186 Mtr-Chr3 21683706 21691915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1186 6 230 MADS-box Gene Family AT3G58780 67.611 2.22e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr3g1186 K-box 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1186 K09264 - gmx:100817239 382.489