Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1156 ATGTTGATAAATTTTCTAGAAAAGCCACTGAAAATGGACAAACTTTCGGGGGATTCTTTGCCAGCTCATGGTGCTGCAGGGCTGTCTGGGATTTCCTCACTTAATATTCCAAATAAAGGGGGAAGCAGTGCATGGAGGATACCGCACACGACTGATATATTTCACGAATCAAATGATGTTAGCCTTTTTTCGACTTCCCTGCCTGTTCTTCCACATGAAAAGCTAAATTTAACTGATTCTGAACAAGATTCCGAACAATCTGGTCAACCGGTGGATGATAACTTGCTAACATTAGGCAAAGTTCATAAAGAGGATGAAGGAAATGATCTTTTTGATGATTTTGAAACCATGCTTCCTGATGATGAAGACGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTCGTAGGTTACCAAATCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGAGGATTTGAAATGGATTTTGAACCACAAGAGGGTCTTAGTTTTGGTATTTCAAAGATGAGTATATCTGATGGAATTGCTTCCAATGGCATTGGACCTTACGCAATCCCAAATGGCGTGGGTACAGTGGCTGGGGAGCATCCCTATGGTGAGCATCCATCAAGGACATTGTTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTAAGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCACAGGGGATTCGTGATGATATCTTACTATGACATTCGAGCTGCTCGTACTGCAATGCGTGCTTTACAAAACAAACCTTTGAGACGAAGAAAACTTGATATCCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACCCTCGTAGTATTCAACTTAGATCCATCGGTATCAAATGACGACCTTCGCCAAATTTTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGCAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGAGCTCGCAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCACGGACTTTTAGGAGTCAAGTAGGTTCGCCTATAGCCAATTCTCCCCCAGGTAGCTGGGCGCATTTTGGTAGTCCTGTTGACCCTAATCCATTAGGTTCTTACAGCAAGTCTCCTGGTTTGGGTCATGCCAGTCCTACCAATCATTTGTCTGGATTGGCTGCAATTCTTTCCCCGCATACATCAACCTCTCCCAAAATTGCGCCGATTGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTACTAACTCTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCTTTTCCTGAGAAAAACGTAAACGTAAGTCCTAGGCCTATATCTGCTTTTGGTGAATCGAATTCAAGTTCATCGAGTGTTGGTACACTGTCTGGTCCGCAATTTCTTTGGGGAAGCCCAACTCCTTATTCAGAGAATTCAAACACATCTGCTTGGTCTTCATCTTCCCTTGGGCATCCATTTACATCTAGTGCCCAAAGGCAGGGTTTCCCATACACGGGTCATCGCAATCCTTTTCTTGGCTCCCAGCACCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGAACGGAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCACTCATGAGTCCCATTGGATTTGGCAATTCAAATCGCGGTGATGGAAATTTTATGATGAACATGGGTTCTCGTTCATCTGCCGGGCATGGTATTGGCCTTTCAGCAACTACCAGTGAAATTGGTTCGCCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTCCTTGGAAATAGTTTATATGCTGGACCAGGAGTATCTAGCATTGAGGGATTTGGTGAACGTGGACGAAGTAGGCGACCTGACAATATTGTGAACCAAGTCGAGAGTAAGAAGCTCTACCAGCTTGATCTTGACAAAATCGTCAATGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACCTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAAGGGACTTATGATTTCCTCTACTTGCCAATCGACTTTAAAAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTCGCCTTCTTTAAGGCTTTTAATGGGAAGAAATGGGAGAAGTTTAACAGCGAAAAAGTTGCTTCACTGGCATATGCACGAATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCCAGCTTAATGAATGAGGATAAGAGGTGTCGGCCAATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGTATTCGTCAACCAGATGGATCTTACTCAGGTGATATGTTGGAGAGCCCCAAAGGCAATTCGGACGATAACCTCGAGAGAGAATAA 2604 0.4251 MLINFLEKPLKMDKLSGDSLPAHGAAGLSGISSLNIPNKGGSSAWRIPHTTDIFHESNDVSLFSTSLPVLPHEKLNLTDSEQDSEQSGQPVDDNLLTLGKVHKEDEGNDLFDDFETMLPDDEDELLAGIMDDFDLRRLPNQLEDLDENDLFVNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIANSPPGSWAHFGSPVDPNPLGSYSKSPGLGHASPTNHLSGLAAILSPHTSTSPKIAPIGKDPGRVSNQMFTNSANSGSTQGVAFQHSISFPEKNVNVSPRPISAFGESNSSSSSVGTLSGPQFLWGSPTPYSENSNTSAWSSSSLGHPFTSSAQRQGFPYTGHRNPFLGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNRGDGNFMMNMGSRSSAGHGIGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGVSSIEGFGERGRSRRPDNIVNQVESKKLYQLDLDKIVNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFFKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDDNLERE* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1156 867 CDD RRM3_MEI2_like 710 795 IPR034454 -
Mtr3g1156 867 MobiDBLite consensus disorder prediction 847 867 - -
Mtr3g1156 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 361 IPR000504 GO:0003723
Mtr3g1156 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 275 IPR000504 GO:0003723
Mtr3g1156 867 Gene3D - 198 292 IPR012677 -
Mtr3g1156 867 MobiDBLite consensus disorder prediction 533 578 - -
Mtr3g1156 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 367 IPR000504 GO:0003723
Mtr3g1156 867 SMART rrm1_1 709 785 IPR000504 GO:0003723
Mtr3g1156 867 SMART rrm1_1 210 278 IPR000504 GO:0003723
Mtr3g1156 867 SMART rrm1_1 295 363 IPR000504 GO:0003723
Mtr3g1156 867 CDD RRM2_MEI2_like 293 363 - -
Mtr3g1156 867 PANTHER RNA RECOGNITION MOTIF-CONTAINING 23 862 - -
Mtr3g1156 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 282 IPR000504 GO:0003723
Mtr3g1156 867 PANTHER PROTEIN MEI2-LIKE 2 23 862 - -
Mtr3g1156 867 MobiDBLite consensus disorder prediction 533 557 - -
Mtr3g1156 867 SUPERFAMILY RNA-binding domain, RBD 709 794 IPR035979 GO:0003676
Mtr3g1156 867 CDD RRM1_MEI2_like 208 284 IPR034453 -
Mtr3g1156 867 Gene3D - 293 390 IPR012677 -
Mtr3g1156 867 Gene3D - 701 796 IPR012677 -
Mtr3g1156 867 Pfam RNA recognition motif 2 707 803 IPR007201 -
Mtr3g1156 867 SUPERFAMILY RNA-binding domain, RBD 206 369 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1156 Mtr-Chr3 20730660 20738967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1156 204 380 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 6.22e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1156 - - gmx:100812324 1451.42