Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1141 ATGTCTATTAAGCTGACGGAGAACGCTATTCCGGCGATAACCAGCGGCGACGTTGATGCAAAACCGTTGGTTCAAGTTATCAGCATTACATTACTCGTAGACAGCGACGACTCTCTGCTGCGAAAATATTATCTGAAACTTTCCGACGGAGTTTATTCTCACTCCGCCACAATCGCTGCTCAACTCAACGACGGAGTCGGAACCGGACGAGTTAAGGAAGGTTCCATCGTTAAGCTTCTCGATTACGTTTGCCCTACTATCGTGATTCGAAAGATTATTATAGTGCATAAAATGGAAACCATTGTCCTTGATTCTCAAATCATTGGGAATCCAAAGTCATTTGTGGATCCAGAATTACCAATGGTAGAAAATGAAGAACCAATACCTATAGCTGCTTTACATCCCTATAAGGGTAAGTGGGCCATCAAGGCAAGGGTTACTTCAAAAGGGCATTTGCGCCACTATAACAGTCCTGAAGGATATCTAAAGGCCTTCTCGTTTGATGTACTTGATTCTGATGGAGGTGAAGTACAGGTAACTTGTTTAAATGATGTAATTGACAGTTTCTATGAAGTGATCGAGGTTGGTAAAGTTTACTTGATATCCAAAGCTGGCTTGATACCTGTTGGCTCAAAAGATTTGAAACATTTGAAGATTGATTGGGAAATCATGCTGAATTCAAATTCAACCGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTATGCATAAATTCTCCTTCAGGTCTATCAGTGACATTGAGAATATAGAGAGTAACACTATCCTTGATGTTATTGGGGTTGTGACATCTGTGAATTCTTCAGTTCTTATGTCAAGGGAAAATGCATTGGAAATGCGTAAAAGGATTTTGAATCTAAAGGACAATTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGTGAGCTATGCAACAGGGAAGGACAAGAGCTGAAAGATATTGTGGATGCTGGGGGTTTTCCTGTTTTGGCAGTAAAGGCTGGGAAGGTTATTGAATTCCGTGGAAAGTCTATAAACGCTATTCCTATTTCACGGCTTTTTGTAAATCCAGATTTCCCTGAGGCTCAGAGCTTAAGGCTCTGGTTTGATCAAGACGGGAAAGATTCTGCTTCTTCGTCCATTTCTAAAGACATTTCTTATGGAGGACCAAAGAATGAGCTACGCAAAACTGTATCTCAAATCAAAGATGAAGGTTTGGGGTGCACAGACAAGCCAGACTGGATAACAACGAGGGCAACCATATCATTCATGAAGACTGATGTATTTTGTTACACAGCTTGCCCTGTCATGATTGGAGATCGACGGTGCAATAAGAAAGTGACTAGGTCCGGTGAACGTTGCTCTAAGAAAGTGACCAAGACAGTAAACACAAGATGGAAGTGCGATACATGCAACCAGGAGTTTGATGTTTGTGAATATCGGTACATTCTCCAAGCTCAAATCGTGGATCATACAGGATTAACATGTGTAACTGCTTTCAATGAAGCTGGGGAAGACATTATGGGGTACTCTGCAAAAGATTTGTATGTGTTAAAGTATGAGCAGGAGGATGATGAGAGGTTCAGAGATATAATCAAGAGTATACTCTTCAATCAGTTTGTGTTTAGGCTGAAAATCCAAAAGGAATTATGTGGTGAAGAACAGAAGGTGAAGATTATAGTAGTTAAGGCAGATAAGGTGAATTACTCTGCAGAGAGCAAGTACATGCTTGATTTGATTTCCAAGTTCGAGCGATGA 1755 0.4108 MSIKLTENAIPAITSGDVDAKPLVQVISITLLVDSDDSLLRKYYLKLSDGVYSHSATIAAQLNDGVGTGRVKEGSIVKLLDYVCPTIVIRKIIIVHKMETIVLDSQIIGNPKSFVDPELPMVENEEPIPIAALHPYKGKWAIKARVTSKGHLRHYNSPEGYLKAFSFDVLDSDGGEVQVTCLNDVIDSFYEVIEVGKVYLISKAGLIPVGSKDLKHLKIDWEIMLNSNSTVELCPDEDGSIPMHKFSFRSISDIENIESNTILDVIGVVTSVNSSVLMSRENALEMRKRILNLKDNSGRSVELTLWGELCNREGQELKDIVDAGGFPVLAVKAGKVIEFRGKSINAIPISRLFVNPDFPEAQSLRLWFDQDGKDSASSSISKDISYGGPKNELRKTVSQIKDEGLGCTDKPDWITTRATISFMKTDVFCYTACPVMIGDRRCNKKVTRSGERCSKKVTKTVNTRWKCDTCNQEFDVCEYRYILQAQIVDHTGLTCVTAFNEAGEDIMGYSAKDLYVLKYEQEDDERFRDIIKSILFNQFVFRLKIQKELCGEEQKVKIIVVKADKVNYSAESKYMLDLISKFER* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1141 584 SUPERFAMILY Nucleic acid-binding proteins 246 373 IPR012340 -
Mtr3g1141 584 CDD RPA1_DBD_B 262 369 - -
Mtr3g1141 584 Gene3D - 3 115 IPR012340 -
Mtr3g1141 584 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Mtr3g1141 584 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 127 581 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr3g1141 584 SUPERFAMILY Nucleic acid-binding proteins 127 241 IPR012340 -
Mtr3g1141 584 Gene3D - 127 237 IPR012340 -
Mtr3g1141 584 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr3g1141 584 Pfam Replication protein A OB domain 251 355 IPR031657 -
Mtr3g1141 584 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 579 - -
Mtr3g1141 584 Gene3D - 240 378 IPR012340 -
Mtr3g1141 584 Pfam Replication factor-A C terminal domain 413 575 IPR013955 -
Mtr3g1141 584 CDD RPA1_DBD_C 397 581 IPR013955 -
Mtr3g1141 584 PANTHER REPLICATION FACTOR A 1, RFA1 2 579 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr3g1141 584 Gene3D - 379 583 IPR012340 -
Mtr3g1141 584 CDD RPA1_DBD_A 129 233 - -
Mtr3g1141 584 SUPERFAMILY Nucleic acid-binding proteins 394 582 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1141 Mtr-Chr3 20440046 20443069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1141 120 579 Core DNA Replication Machinery Family AT2G06510 62.931 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1141 K07466 - mtr:MTR_3g047950 1150.58