Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1116 ATGGATGGTAATGTTCCTGAAGAAGCCACACAGTCAACAAATGTGGAAATATCTGAAGAAGATATTTTAGTTGCTGCTCCTAATGTTGGTGTGGAATTAAATAGTGAACCTTGTAAGGGGATGGAATTCAAATATGTGGAAAAGGTTAGAGAATTTTATAATTCATTTGCAAAAAGGATGGGTTTTGGAGTACGTGTTCGCTCAACTAAACCAAAGAGAGCTGTCTTTGTATGTTGTAATGAAGGTCATCATATAGTGAAAAGTTCAACAAACAAAGAAATCCAAGATGGCACAAATCAAACTAAAAGAAAGTGTTCTACTTCTCGAACTGGTTGTCTAGCCACACTTGTTGTTAAAAGAGGTACATTAGAAGGAAATTGGATTATATGTTCATTTAAGAATGATCATAACCATCCCATGGTTAGCCCTAAAAGTGTGTCTTATATGCGGTGTCATAAAAGCATGAATGGTGCTGCAAAAAGTCTTGTTGAACATTTTAAGGAAGAAGGTATACCGACAGGAAAGGTTGCTACAATGTTCAGTGAAGGGGACTTGGCTTTCTCTAATAGGGATTGTTGGAATCATGTTAGAAGTCTTCGAAGAAAAAATTTAGACGTTGGAGATGCTCAAGCTGTTTTTAATTATTGTAAACAGAAACAGGTAGAAAATTCAAACTTTTTCTATGAAATCCAATGTGATGAAGATTCTCGGATGATAAACTTTTTTTGGGTTGATGCTAGATCAAAATTAGCTTACCAACAATTTGGAGATGTAATATCTTTTGACACCACATATAAGACTAACAAGTATAGTATGCCATTTGCCCCGTTTGTTGGATTGAATAATCATTATCAATCAATTTTATTTGGTTGTGCTTTACTACAAGATGAGTCAGAACGCTCGTTTATATGGTTGTTTGAAACTTTTCTTAAGGCAATGGATGGTAAAAAGCCCAAATCTGTCATAACTGACCAGGATTTGGCTATGAAAGGTGCTTTAGCCAATGTTTTTCCAGAAACTAGACATCGCCTCTGCTTATGGCATATTAGGAAAAAATTTGCTGAAAAGTTAGCTCATGTTTATCATAAAAATTCCACTTTGAAGCGAGAATTGAAAAAATGCATTCATGTTTCACCAAGTATAGAAAGTTTTGAAGAAGACTGGAGCCGATTAATGATTGAGTACGGACTAGACAACAATGAATGGCTTCAAGGGTTATATAAAATTAGAGAATCTTGGATACCAGTTTATAATAGAAGCTGTTTTTTTGCTGGGATGAATACAAGTCAAAGAAGTGAGAGCATCAATGCGTTTTTTGATTCTTTTGTGAATGCATCTACAACATTGCAAGAATTTGTGTTGAAATTTGAAAAGGCGGTTGATAGCCGCTTAGAAGTAGAAAAAAGAGAGGATTATGAAAGTAGGCATAAAAAACGCATTTTGGCTACAGGGTCAAAACTTGAGGAGCATGCTGCGTCTATTTATTCGAGAAACATTTTTGGTAAATTTCAAGATGAGATCAGGAAGATCTACAAATTTAAAAAAAAGAAGATTAGCAAAGATGGACATAACTATGTCTATCAAGTTTCCAGTAACTACAATGCTCGAGATATGTTTTTCGTTGATATGAATTTGGACGCACAGATTGCAAAATGTGGATGTCAATTATATGAGTTTTTGGGGATATTGTGCAGGCATATACTAGTAATTTTTCAAGAAAAAGGTATCACTCAAATTCCTGACCATTTTATTTTGCAGCGTTGGACTAAAAATGCTAACAGAAGCATTGAAGTTTGTGATACGACGAGTAATTTTGATGGTCAAAATAGCACACCAAAGATATTAAGAAGGATGCATGCTCAACAAGAAGCAAAGGTATTACTTGATTTGGCTGAAGAGTCTGATGAGATATACAAATTCATTATATCTGATTTGAGGCGCACTCGTATGTCAGCCATTGCAATGAAGAAATCAAATTTAGGTATCAGTGATGGAGTTTCTCCTTTGGAATCTAGCCAAAATGTCAACCAAAATTGCTTGTCGAAGGAAGAAAGTGAACCAGAATTGACTATTAGAAATCCACGCAATGCACAAACAAAAGGGAGAAAGAAGGATGGACAGAAAAACACTCAAAATTGTAGATTCAAGAGTGGAATTGAACTGTCACATGCTCAACAAGTAGCAGTAAAAAGAAAAGCATGTCATGAGTGTGGTGAATCTGGTCACAACAGCAGAACTTGCAAGAAAAGAAATCAAAATGATTAA 2265 0.3506 MDGNVPEEATQSTNVEISEEDILVAAPNVGVELNSEPCKGMEFKYVEKVREFYNSFAKRMGFGVRVRSTKPKRAVFVCCNEGHHIVKSSTNKEIQDGTNQTKRKCSTSRTGCLATLVVKRGTLEGNWIICSFKNDHNHPMVSPKSVSYMRCHKSMNGAAKSLVEHFKEEGIPTGKVATMFSEGDLAFSNRDCWNHVRSLRRKNLDVGDAQAVFNYCKQKQVENSNFFYEIQCDEDSRMINFFWVDARSKLAYQQFGDVISFDTTYKTNKYSMPFAPFVGLNNHYQSILFGCALLQDESERSFIWLFETFLKAMDGKKPKSVITDQDLAMKGALANVFPETRHRLCLWHIRKKFAEKLAHVYHKNSTLKRELKKCIHVSPSIESFEEDWSRLMIEYGLDNNEWLQGLYKIRESWIPVYNRSCFFAGMNTSQRSESINAFFDSFVNASTTLQEFVLKFEKAVDSRLEVEKREDYESRHKKRILATGSKLEEHAASIYSRNIFGKFQDEIRKIYKFKKKKISKDGHNYVYQVSSNYNARDMFFVDMNLDAQIAKCGCQLYEFLGILCRHILVIFQEKGITQIPDHFILQRWTKNANRSIEVCDTTSNFDGQNSTPKILRRMHAQQEAKVLLDLAEESDEIYKFIISDLRRTRMSAIAMKKSNLGISDGVSPLESSQNVNQNCLSKEESEPELTIRNPRNAQTKGRKKDGQKNTQNCRFKSGIELSHAQQVAVKRKACHECGESGHNSRTCKKRNQND* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1116 754 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 31 699 - -
Mtr3g1116 754 Pfam MULE transposase domain 258 352 IPR018289 -
Mtr3g1116 754 MobiDBLite consensus disorder prediction 664 684 - -
Mtr3g1116 754 MobiDBLite consensus disorder prediction 663 712 - -
Mtr3g1116 754 Pfam FAR1 DNA-binding domain 51 141 IPR004330 -
Mtr3g1116 754 ProSiteProfiles Zinc finger SWIM-type profile. 539 575 IPR007527 GO:0008270
Mtr3g1116 754 Pfam SWIM zinc finger 542 574 IPR007527 GO:0008270
Mtr3g1116 754 SMART 26again6 550 577 IPR006564 GO:0008270
Mtr3g1116 754 ProSiteProfiles Zinc finger CCHC-type profile. 734 749 IPR001878 GO:0003676|GO:0008270
Mtr3g1116 754 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 699 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1116 Mtr-Chr3 19651428 19653692 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr3g1116 MULE 4.1e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1116 - - qlo:115970754 813.142