Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1101 ATGTACCATTTTCTTATTGCTAGATTAACCCATCATAGAACCCTTCAATTTAGTGTTCTATTTCGCAATGTTTTTTCTAGTTCTTTCTCTGTTGAAAAGCATCATAAAGGTGACACCTTTACAGTGTCAAACCTTGTTAATTCATGTGAGTTGTCCCCTGAAACAGCCCTTAAACTCTTAAACAGGTTGAAACCCAAAAACCCTAATGCCCCAAATGCTGTTATTCAACTTCTAAGGAACTATGGTTTTTCTGATTCCCAATTATGTATCTATGTAAAGAAACACCCTTTTGTACTTTTATGCAAAATCGAAAAGACCCTTTTGCCTAAACTCGATTTTTTGCGTTCCATTGGGGTTTCAAACACTGATCTCCCCAAAATACTAATTAGGAACACTTACTTTTTGACTTCAAGCTTGGAGAAATCCATTATCCCTCGCTATGAGGTCATTAGAAGTTTCGTTCGCAATGATAAAGAGGTAGTTTCAACTTTGAAGCGTGGAACATGGGGCACACACAATGCTTGGATTGTAAATGATGCAGTTCAGAATATTGAGGTTTTGAGGAAGCTTGGTGTGCTTCAAGGTTCCATTTCTCTACTGGTATCCAATTTTCCCAATGTAGCATTCGCCAGGCATTCTAGATTTGTTAAGGCTGTTAATTCAGTCAAAGAAATGGGGTTTGATCCTTTGATGTCTTATTTTGTTTTGGCAGTTCAAGTAATTGCAAAGATGAACAAAGAGAATTGGGAATCAAAAATCAAGATTTTTGAGAGGTGGGGTTGGTCGAGAGATATGTGTCTTTTAGCTTTCCAAAAACAGCCTCATTGTATGATGTTGTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGATGAACGATGTGGGTCTTCCACCACAAGACATTGTAGGAAGCCCTGCTGTTCTGTTCCGTAACTTGGAGAAGACACTTATTCCTAGATGTACAGTTATTAAGATTTTGAAGTCAACGGGTTTGATAAAGAGTGGTTTGCGCATAAGTACCTTTATTTGCATAACTGAGAAAACATTTTTGGGGCGATATGTGACCCCATTTCGGAAAGATTTACCATTGTTATTGGATGCATATAAAGACGAAATGGCAAAGCCATTATAA 1134 0.3713 MYHFLIARLTHHRTLQFSVLFRNVFSSSFSVEKHHKGDTFTVSNLVNSCELSPETALKLLNRLKPKNPNAPNAVIQLLRNYGFSDSQLCIYVKKHPFVLLCKIEKTLLPKLDFLRSIGVSNTDLPKILIRNTYFLTSSLEKSIIPRYEVIRSFVRNDKEVVSTLKRGTWGTHNAWIVNDAVQNIEVLRKLGVLQGSISLLVSNFPNVAFARHSRFVKAVNSVKEMGFDPLMSYFVLAVQVIAKMNKENWESKIKIFERWGWSRDMCLLAFQKQPHCMMLSEKKIMKTMNFLMNDVGLPPQDIVGSPAVLFRNLEKTLIPRCTVIKILKSTGLIKSGLRISTFICITEKTFLGRYVTPFRKDLPLLLDAYKDEMAKPL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1101 377 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 17 372 - -
Mtr3g1101 377 Gene3D Transcription termination factor 3, mitochondrial 43 169 IPR038538 -
Mtr3g1101 377 Gene3D Transcription termination factor 3, mitochondrial 171 361 IPR038538 -
Mtr3g1101 377 SMART mt_12 198 228 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 PANTHER CGI-12 PROTEIN-RELATED 17 372 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 Pfam mTERF 75 228 IPR003690 GO:0003690|GO:0006355
Mtr3g1101 377 Pfam mTERF 242 350 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1101 Mtr-Chr3 19119803 19126235 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mtr3g1101 mTERF 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1101 K15032 - gmx:106799612 415.616