Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1098 ATGAAGAACAATAATTCTAAGAGAAGTGGTGTAAGAAAATACCACAAATCCGAACAGCCGCGCCTTCGATGGACACCGGAACTTCATCAATACTTTGTTCAAACTGTTGAAAGTCTTGGTGGAAAAGATAAGGCTAGTCCTAAACACATTTTGAATATGATGCAAGTGAAGGGGTTGAGAATCTCCCATATTAAAAGTCATCTCCAGATGTACAGGAACGTGAAGGGACAAACTATTCTTGCACCAACATTGGAAGAAAATGCAAAATTCAATCATCTTCCAATGTGCTCCAGTTGTTCACCCCAAAGATCGAGGAATATCAATCAAGAACTTCAACCTTTACACAACAAAAGACTTTCACAAGCAAGTGAAACTGATCATTATTATGATCTAAATCAGGAGCCTGAGTCAAGTGCATGCTTTCTTAGTGACATATCAAATGAAGAAAACGATTGTAGAACTACCAAATATCTAAATCTCCCATTCCCTTTCAGTTCTCTGATAATTCCGATGGTGCATAGTGATCAAGGCATAACACATTTTTCTTCACCAAATGAGACAAATAATCATGATGTAGATTCTAGTTCTATAAAATCTCATGGGAGAGATTATATAAACTTGGACCTATCAATTTGA 636 0.3664 MKNNNSKRSGVRKYHKSEQPRLRWTPELHQYFVQTVESLGGKDKASPKHILNMMQVKGLRISHIKSHLQMYRNVKGQTILAPTLEENAKFNHLPMCSSCSPQRSRNINQELQPLHNKRLSQASETDHYYDLNQEPESSACFLSDISNEENDCRTTKYLNLPFPFSSLIIPMVHSDQGITHFSSPNETNNHDVDSSSIKSHGRDYINLDLSI* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1098 211 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 10 138 - -
Mtr3g1098 211 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g1098 211 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Mtr3g1098 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 10 138 IPR044848 GO:0003700
Mtr3g1098 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Mtr3g1098 211 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 73 IPR006447 GO:0003677
Mtr3g1098 211 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Mtr3g1098 211 Gene3D - 19 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1098 Mtr-Chr3 19031308 19035933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1098 2 75 G2-like Transcription Factor Family AT1G14600 58.108 4.29e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr3g1098 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1098 - - ccaj:109790621 258.455