Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1090 ATGAACAACACCATTCCTGATTGGAATTTTGGGATTGATAGTTTTGTCACCAATCAAAAGAAGCAACCTATGGGGTTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCAAGTAGTATTGAATAGCCAAACAAATAAGAAACAACTTGTGAATAACTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAATCTTTTATCTGAACTTCCACCTTGTAATGTCGAGTCTTTCAATTCGCAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTTCCTATGTCGGCTCCGAGGTTTCATCACCTTGTTCCCGATTCATCGCAAAGAAACAATGATTTGTGTGGATCCAGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACATCCCAATGTTACTTTAGCATCTACTAACGGCGATGCAAATTTAAGAGACAAAATTACGGGTAATCTGTCACAATGTGATGTTAGAGAGTGTTCGACGATGACAGTCGGTTCAAGTTATTGCGGAAGCAACCAAGTCCAACAAGATCCAGATGTAAGCAGAGTTTCAAGCAATGGTGTTTGGACTAATTTATCGACCGAGCCTGAACAAGTCAGAAATGATGTTCAGAAGACAATTCCTCGGCATGAGAATGGGAAATCGGAGAAGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCTTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTCGAACAAAGCGAGGATACAGAACTTAAATCAGGCGTGAGGAAAAAGACGTCTCAGCGATCAGGGTCGGCTCGTAGGAACCGCGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGGATTAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGTAAGACGGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGACACCAATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACTACGCCTTCGTTTCCTCCACTTCAAAATCCAATGCAATTACCGAGAATGCCTCTGGATCTGTCCGTTTCTTCGTCACAGACGCCAAATCAGACATTAACGTGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCAAGCAATAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTTAATTAG 1524 0.4068 MNNTIPDWNFGIDSFVTNQKKQPMGLDHELVELLWQNGQVVLNSQTNKKQLVNNSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNSQPTNTKPPFVQEFPMSAPRFHHLVPDSSQRNNDLCGSSKVVNFSHFSRHPNVTLASTNGDANLRDKITGNLSQCDVRECSTMTVGSSYCGSNQVQQDPDVSRVSSNGVWTNLSTEPEQVRNDVQKTIPRHENGKSEKLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSGVRKKTSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDLSVSSSQTPNQTLTCQNPVLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1090 507 MobiDBLite consensus disorder prediction 249 270 - -
Mtr3g1090 507 PANTHER TRANSCRIPTION FACTOR PIF5 1 495 - -
Mtr3g1090 507 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Mtr3g1090 507 MobiDBLite consensus disorder prediction 483 507 - -
Mtr3g1090 507 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 495 IPR031066 -
Mtr3g1090 507 SMART finulus 321 370 IPR011598 GO:0046983
Mtr3g1090 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 393 IPR036638 GO:0046983
Mtr3g1090 507 MobiDBLite consensus disorder prediction 233 248 - -
Mtr3g1090 507 MobiDBLite consensus disorder prediction 271 302 - -
Mtr3g1090 507 MobiDBLite consensus disorder prediction 313 330 - -
Mtr3g1090 507 MobiDBLite consensus disorder prediction 220 330 - -
Mtr3g1090 507 Gene3D - 310 371 IPR036638 GO:0046983
Mtr3g1090 507 Coils Coil 321 341 - -
Mtr3g1090 507 CDD bHLH_AtPIF_like 315 378 - -
Mtr3g1090 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1090 Mtr-Chr3 18768430 18772470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1090 8 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 36.095 1.08e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g1090 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1090 K16189 - gmx:100800166 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1090 3 18768430 18772470 Mtr3g1090 3 18768430 18772470 ECH