Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1084 ATGGAGATTGGCAATCTCAATCAAATTCAGGTTCTACAAATGGGAAATAACAGCTTGAGTGGACATGTTCCTTCTAAACTCTTCAACATTTCAACATTGGAACATTTGCATCTTGAGCTAAATTCTCTCTCAGGCATGCTTCCACCCAATATGGGACTTGGCCTTCCTAATCTACAAGAGCTGCACATGTACAAAAACAAATTTGTTGGGAAAATTCCAAATAGTATATCCAATGCTTCAAACCTCTTCATAATTGATTTGAGTTGGAATAAATTTAGTGGAATTATACCCAACACTTTTGGAAATTTAAGATTCCTCAAATCACTCATTATAGGTGGCAATCCTAATTTGACATTAACAGATGATTCTCTTGAATTCAATTTCCTCACTTCACTGACAAGTTGCACATATCTTACACATCTTGAAGTATCAGAGAATAGTTTACCATCAAATCTTCCCAAGTCCATTGGAAACTTATCTGTAGAAAACTTTTGGGCAAATTCTTGTGGAATTAGTGGAAATATTCCACTAGAAATCGGAAATATGAGCAACCTGATTCGCTTATCTCTGAGGAACAATGATCTAAATGGACTAATCCCTACTACAATTAAAGGTTTACATAAGCTTCAGTCTTTGAAACTTGACCATAATGGACTGCAAGGATCCATCATTAACGAGGTTTGCGAACTTAGGAGTTTAGGTGAGTTGTCCTTAACAAGCAATAAGCTTTTCGGAGTGTTACCAACATGCTTGGGAAATATGAGTTCTCTTAGAAAGTTGTACATAGGATCTAATAGGTTAACCTCAGAGATACCTTCCTCCTTTTGGAATCTCAAAGATATTCTAGAGGTGTACTTATCTTCCAATGATTTAACCGGAAATCTTCCACTTGAGATCAAGAATTTGAGAGCTATTGTAATATTAGATTTATCAAGAAATCAATTTTCAAGCAATATTCCTACAACCATCAGTTTCTTGAAAACTTTAGAAATTCTCTCCTTGGAATCTAACAAATTGATAGGGACTATCCCAACTTCAATTGGTGAAATGTTAAGCCTCAATTTCTTGGACTTGTCTCAAAATTTTATAACTGGTGTGATTCCAGAATCCTTAGTGTCACTTTCTTATCTTAAGTACATGAATTTGTCATACAATAGATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCAACAAATTTACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGAAGTGCTAGGTTAGAAGTGCCTCCATGTGATAAACAAAGTAGGAAAAAGTCAATGAAAAAGATGTTATTAATCAAAATCTTATTGCCTATAATTGTGATAGCCATTTTGGTTGTCCTATGCATAATTCTTCTAATGCATAAAAAGAAAAAAGTTGAAAATCCACTTGAAATGGGTTTATCAACTGATTTAGGGGTTCCAAGAAGGATTTCATATTATGAACTTGTGCAAGCAACTAATGGATTTAGCGAGAGTAACTTACTTGGAAAGGGGGGCTTCGGCTCTGTGTATCAGGGAATGCTTTCTACCGGGAAGATGGTAGCAATTAAAGTACTTGACTTGAATATGGAAGCAACATCAAGAAGTTTTGACGCAGAATGCAATGCAATGCGCATTCTTCGACATCGAAATCTTGTTGAGGTTATTACAAGTTGTTCAAATAAAGATTTCAAGTCATTGGTGATGGAGTTTATGTCAAATGGAAGTGTTGAAAAATGGTTATACTCGGATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCATCTGCATTGGAGTATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTAGATGAAAATATGGTTGCACATGTCAGTGATTTTGGAATTTCTAAGCTCTTGGATGAAGGACATTCTAAAATCCATACTGAGACTTTAGCTACTCTTGGCTATGTTGCACCAGAGTATGGATCTAAGGGAGTCATTTCTATTAAAGGAGATGTGTACAGTTATGGAGTAATGCTAATGGAAATCTTCACAGGAAAGAAGCCAACAAATGAAATGTTTGTACAAGAATTAACCTTAAAAACATGGATTAGTGAGTCAATGCCTAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACAAGGGAATGAAACTCATGAAATTGTATCACATGTATCATCTGTTTTGGATTTAGCATTGAGATGTTGTGCAGATTCACCAGAAGCAAGGATTAGTATGGCAGATGTAACTGCATCACTAATCAAAATCAAGATCTTATTCATCTAG 2325 0.3527 MEIGNLNQIQVLQMGNNSLSGHVPSKLFNISTLEHLHLELNSLSGMLPPNMGLGLPNLQELHMYKNKFVGKIPNSISNASNLFIIDLSWNKFSGIIPNTFGNLRFLKSLIIGGNPNLTLTDDSLEFNFLTSLTSCTYLTHLEVSENSLPSNLPKSIGNLSVENFWANSCGISGNIPLEIGNMSNLIRLSLRNNDLNGLIPTTIKGLHKLQSLKLDHNGLQGSIINEVCELRSLGELSLTSNKLFGVLPTCLGNMSSLRKLYIGSNRLTSEIPSSFWNLKDILEVYLSSNDLTGNLPLEIKNLRAIVILDLSRNQFSSNIPTTISFLKTLEILSLESNKLIGTIPTSIGEMLSLNFLDLSQNFITGVIPESLVSLSYLKYMNLSYNRLQGEIPDGGPFNKFTAQSFMHNEALCGSARLEVPPCDKQSRKKSMKKMLLIKILLPIIVIAILVVLCIILLMHKKKKVENPLEMGLSTDLGVPRRISYYELVQATNGFSESNLLGKGGFGSVYQGMLSTGKMVAIKVLDLNMEATSRSFDAECNAMRILRHRNLVEVITSCSNKDFKSLVMEFMSNGSVEKWLYSDNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGISKLLDEGHSKIHTETLATLGYVAPEYGSKGVISIKGDVYSYGVMLMEIFTGKKPTNEMFVQELTLKTWISESMPNSVMEVVDYNLVSQQGNETHEIVSHVSSVLDLALRCCADSPEARISMADVTASLIKIKILFI* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1084 774 Gene3D Ribonuclease Inhibitor 116 431 IPR032675 -
Mtr3g1084 774 SMART LRR_typ_2 254 277 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 302 326 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 230 253 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 80 102 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 6 30 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 182 205 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 55 79 IPR003591 -
Mtr3g1084 774 SMART LRR_typ_2 350 373 IPR003591 -
Mtr3g1084 774 Gene3D Phosphorylase Kinase; domain 1 477 569 - -
Mtr3g1084 774 SUPERFAMILY L domain-like 166 413 - -
Mtr3g1084 774 Pfam Leucine Rich Repeat 81 103 IPR001611 GO:0005515
Mtr3g1084 774 SMART serkin_6 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1084 774 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 773 - -
Mtr3g1084 774 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Mtr3g1084 774 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 2 773 - -
Mtr3g1084 774 Gene3D Ribonuclease Inhibitor 53 115 IPR032675 -
Mtr3g1084 774 Pfam Leucine rich repeat 231 291 IPR001611 GO:0005515
Mtr3g1084 774 Pfam Leucine rich repeat 181 219 IPR001611 GO:0005515
Mtr3g1084 774 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Mtr3g1084 774 Gene3D Ribonuclease Inhibitor 1 52 IPR032675 -
Mtr3g1084 774 Pfam Protein kinase domain 495 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1084 774 Gene3D Transferase(Phosphotransferase) domain 1 570 771 - -
Mtr3g1084 774 SUPERFAMILY Protein kinase-like (PK-like) 476 767 IPR011009 -
Mtr3g1084 774 ProSiteProfiles Protein kinase domain profile. 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g1084 774 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Mtr3g1084 774 SUPERFAMILY RNI-like 3 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1084 Mtr-Chr3 18529319 18532360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1084 3 774 Receptor kinase-like Gene Family AT3G47570 37.923 1.46e-166 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr3g1084 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1084 - K13420 mtr:MTR_6g040210 1115.14