Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1080 ATGCAGTTTTACGTGGAGTCTTGGAAGATAAAGGCCAGGGTGGGACAGAATGCTGATAGAACTCGTAGTGAAAAAGAATTTTATATGAACATGGAGGCACAATATGAGAGTGACGCTGAACCAGATGATGCCAGTGGGAAGCAAAATGAGGCAGCTGCTGTTGACCGGCTCAGTACAAGAGAATCAAATGTAGAGACGACGAGTAGGAACCCATCTGCTAGTGAAAGGTGGGGTTCTTCATATTTGAAAGACTGCCAGCCTATGAGCCCTCAAAATGGTTCTGAATCTGGGGATGACTCAAAAAGTGGATCAGACTATAGAAATGAAGATGAATTTGAAGATAATTCATCGGAAGGAAGAGGGGAAAAATTAGGCTCAGAAGATGAAGATGGACAAAAGGATTCAGGAAAAGGTCAAAGGGGAGATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGATTCTTATGGGCAGGATGGGGAAGAGCAGGGTGAATCAGTGCATTCTAGGGGTTTTCGTCCATCCACAGGATCAAACTCATGCCTTCAACCGACGTCTACTAATGTCAACAGGCGTGTGCATAGGAAATCTAGGATTTTAGATGATGCTGAAGATGACGATGATGATGCTGATTATGAAGAAGATGAACCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGCAACAAGCGGTCGTGGTGCAAACAAGTATAAAGATTGGGAAGGGGAAGACTCGGATGAAGTTGATGATAGTGATGAGGACATAGATGTTTCGGATAATGACGATTTATACTTTGATAAGAAGGCTAAGGGAAGACAACGAGGTAAATTTGGACCAAGTGTAAGATCAACCAGAGATTGTAAAGCATTTACTGCTTCCAGTCGACAAAGAAGAGTTAAATCATCTTTTGAAGATGAAGATGAGAACTCTACAGCAGAGGATTCTGACAGTGAGAGTGATGAAGATTTCAAAAGCTTGAAGAAGAGAGGTGTGCGTGTACGCAAGAATAATGGCCGATCATCAGCAGCCACAAGTTTTTCTAGGCCTAGTAATGAGGTCCGGTCTTCTAGTAGGACTATTAGGAAAGTATCATATGTTGAAAGTGATGAAAGTGAAGGAGCTGATGAAGGGACGAAGAAATCTCAAAAGGAAGAAATTGAAGTGGACGATGGGGACTCCGTAGAAAAGGTGCTTTGGCATCAACCGAAGGGCATGGCTGCAGAGGCTCAAAGGAATAATCAATCCATGGAGCCTGTTTTAATGAGTCACTTATTTGATTCTGAACCTGATTGGAACAATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGTTGATCTGCAAAATCTCAGTGGTTTTAAAAAAGTTTTGAATTATACCAAGAGAGTAACAGAGGAAATCAGAAACAGGATGGGAATATCGAGAGAAGAGATTGAGGTCAACGATGTGAGTAAAGAAATGGACATAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTAGCAACGACAATTCTGGCAATGTGTTTCCAGAATATTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACCTGGGAGAAGGACATTGATATTGCTTTTGCTCAACACACTATTGATGAATATAAGACTCGTGAGGCTGCAATGTCAGTTCAAGGGAAGATGGTAGATTTTCAGCGTAGGCAGAGCAAAGGAAGTTTGCGGAAACTTGATGAACAACCTGAATGGTTGAAGGGTGGGAAGCTTCGTGACTATCAACTTGAGGGTCTAAATTTTCTTGTTAACAGTTGGAAAAATGATACAAATGTTGTTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAATCAGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAGGAATTCAGGAAGTGGCTTCCTGATCTGAATGTTATTGTTTATGTTGGTACTCGTTCTAGTAGAGAGGTTTGCCAACAATATGAATTTTGTAATGAGAAAAAGGCGGGGAAGCAAATTAAATTCAATGCACTGTTGACTACATATGAAGTAGTTCTGAAGGATAAGGCTGTTCTCTCGAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTTAAAAACAGCGAGGCACAGTTGTATACCGCACTTTCAGAATTCAACACAAAGAACAAGTTGCTGATCACTGGCACTCCGCTGCAAAATAGTGTTGAAGAGCTATGGGCTTTGCTACACTTCCTTGATTCTGATAAGTTCAAGAGCAAAGATGAATTTGCTCAAAACTATAAGAATCTAAGTTCTTTTAACGAGAATGAGCTTTCTAATCTTCACATGGAACTGAGGCCTCACATGCTTCGAAGAGTTATCAAAGATGTGGAAAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTGGATATGTCTCCTCTGCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTCCGTGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTAGTAGAATTGAAGAAGTGCTGTAATCATCCCTTCTTGTTTGAAAGTGCTGACCACGGTTATGGTGGGGACTCTGAAAGTAGCGACAGCAGTAAACTTGAGAAAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTCGATAAGCTACTTGTCAGATTGCATGAAACAAAGCATCGTATTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCACAGTATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGAAGTACAAAGTCTGAGCTGCGACAACAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGTGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGACTCAGATTGGAATCCTCAAAATGATCTACAGGCAATGAGTCGAGCTCATCGAATTGGGCAACGGGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTAGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTCATTCAAAAACTAAATGCAGAGGGTAAACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGCTTTTTTGACAAAAATGAGCTCTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGGAATGATGAAGAGAGCAAGAAGCGACTCTTAAGTATGGACATAGATGAGATTCTCGAAAGAGCAGAGAAGGTTGAAGAAAAGGAAAATGGGGGTGAGCAGGCACATGAGTTATTAAGTGCCTTTAAGGTTGCAAATTTTTGTAATGATGAAGATGATGGTAGTTTCTGGAGCCGGTGGATAAAGGCTGATTCTGTCGCTCAAGCAGAGAATGCTCTTGCTCCACGTGCTGCAAGAAATATCAAAAGCTATGCAGAGGCTGATCAATCTGAAAGAAGTAAGAAAAGAAAAAAGAAGGAAAATGAACCAACAGAGCGGATTCCGAAACGAAGGAAAGCAGATTATTCAGCTCATGTGATATCAATGATTGATGGAGCATCTGCCCAAGTGAGAAGCTGGTCATATGGGAATTTGTCTAAGCGAGACGCACTCCGGTTTTCTCGTTCCGTTATGAAATTTGGGAATGAGAGCCAAATCAATTTGATTGTTGCTGAAGTTGGTGGTGCAATAGAAGCAGCTCCGCTCAAAGCACAAGTGGAACTCTTCAATGCCTTGATTGATGGTTGTAGAGAAGCAGTGGAAGTTGGAAGTCTGGATCTGAAGGGGCCTTTGCTGGATTTCTATGGTGTCCCAATGAAGGCAAATGAGTTACTTATCCGTGTTCAAGAGCTTCAACTGCTAGCAAAGCGCATTAGTCGGTATGAAGATCCTATTGCACAATTCCGTGTTTTAACATATCTCAAACCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTACATTACCATGGATATGGTAATTGGGAAGTGATAAGGTTGGATGAAAGGCTTGGTCTTACGAAAAAAATTGCACCAGTGGAACTTCAGCATCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGGGCTAATGCCCTGTTGGAACAAGAACTTGCTGTTCTTGGTGTGAAAAATGCCTCTAGCAAAGTTGGAAGGAAGACTTCCAAGAAAGAGAGAGAAGAGAGAGAGCATCTTGTAGACATCTCTTTGTCGCGTGGGCAAGAGAAAAAGAAAAACATTGGTTCTTCTAAAGTTAATGTCCAAATGAGAAAGGATAGACTTCAGAAACCTCTAAATGTTGAACCTATTGTAAAAGAGGAGGGTGAAATGTCTGATGATGATGATGTATATGAGCAGTTCAAGGAGGGGAAATGGAAGGAATGGTGTCAAGATCTGATGGTTGAAGAAATGAAGACTTTGAAACGTCTTCACAGGTTGCAAACAACCAGTGCAAGTCTTCCGAAGGAAAAGGTGCTTTCAAAAATCCGGAACTACTTGCAGCTTCTTGGGCGAAGGATAGATCAAATTGTCTCAGAACAGGAAGACGAACCCCATAAGCAAGATAGAATGACTACGAGATTGTGGAAGTATGTTTCTACCTTTTCCCATCTTTCAGGGGAGAGGCTTCACCAAATTTATTCAAAACTTAAACTGGAGCAAAATGCGGTAGGGGTTGGCTCCTCTCTTCCCAATGGGTCAGTATCTGGTCCATTTAGCAGAAATGGAAACCCTAATAGTTCATTCCCTCGCCCTATGGAGAGGCAAACGAGATTTCAAAATGTGACAGCCCACCCAATGCGCGAACAAACTTATGATACAGGCATGTCTGAGGCATGGAAACGAAGAAGAAGAGCCGAAAACGATGGTTGTTTCCAGGGTCAACCACCACCTCAAAGAATCACGAGTAATGGAATTCGACCGCTGGATCCTAACTCATTGGGAATCCTTGGGGCAGGACCATCTCAATGCTTCTCTGGTGAGAAACTGCTTAAGACTCAACCTGCTGGGTCTCCTTCAAGACAAGAATTCTCTCTAGGAGTTGAGTAG 5217 0.4154 MQFYVESWKIKARVGQNADRTRSEKEFYMNMEAQYESDAEPDDASGKQNEAAAVDRLSTRESNVETTSRNPSASERWGSSYLKDCQPMSPQNGSESGDDSKSGSDYRNEDEFEDNSSEGRGEKLGSEDEDGQKDSGKGQRGDSDVPAEEMLSDDSYGQDGEEQGESVHSRGFRPSTGSNSCLQPTSTNVNRRVHRKSRILDDAEDDDDDADYEEDEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDEDIDVSDNDDLYFDKKAKGRQRGKFGPSVRSTRDCKAFTASSRQRRVKSSFEDEDENSTAEDSDSESDEDFKSLKKRGVRVRKNNGRSSAATSFSRPSNEVRSSSRTIRKVSYVESDESEGADEGTKKSQKEEIEVDDGDSVEKVLWHQPKGMAAEAQRNNQSMEPVLMSHLFDSEPDWNNMEFLIKWKGQSHLHCQWKSFVDLQNLSGFKKVLNYTKRVTEEIRNRMGISREEIEVNDVSKEMDIDIIKQNSQVERIIADRISNDNSGNVFPEYLVKWQGLSYAEVTWEKDIDIAFAQHTIDEYKTREAAMSVQGKMVDFQRRQSKGSLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWKNDTNVVLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYVGTRSSREVCQQYEFCNEKKAGKQIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDEFAQNYKNLSSFNENELSNLHMELRPHMLRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFRDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSESSDSSKLEKIVFSSGKLVILDKLLVRLHETKHRILIFSQMVRMLDILAQYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSFFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENGGEQAHELLSAFKVANFCNDEDDGSFWSRWIKADSVAQAENALAPRAARNIKSYAEADQSERSKKRKKKENEPTERIPKRRKADYSAHVISMIDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNESQINLIVAEVGGAIEAAPLKAQVELFNALIDGCREAVEVGSLDLKGPLLDFYGVPMKANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGYGNWEVIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGVKNASSKVGRKTSKKEREEREHLVDISLSRGQEKKKNIGSSKVNVQMRKDRLQKPLNVEPIVKEEGEMSDDDDVYEQFKEGKWKEWCQDLMVEEMKTLKRLHRLQTTSASLPKEKVLSKIRNYLQLLGRRIDQIVSEQEDEPHKQDRMTTRLWKYVSTFSHLSGERLHQIYSKLKLEQNAVGVGSSLPNGSVSGPFSRNGNPNSSFPRPMERQTRFQNVTAHPMREQTYDTGMSEAWKRRRRAENDGCFQGQPPPQRITSNGIRPLDPNSLGILGAGPSQCFSGEKLLKTQPAGSPSRQEFSLGVE* 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1080 1738 Pfam Helicase conserved C-terminal domain 916 1029 IPR001650 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 1619 1642 - -
Mtr3g1080 1738 Coils Coil 1059 1079 - -
Mtr3g1080 1738 SMART ultradead3 595 791 IPR014001 -
Mtr3g1080 1738 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 1650 - -
Mtr3g1080 1738 CDD SF2_C_SNF 906 1040 - -
Mtr3g1080 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 507 571 IPR000953 -
Mtr3g1080 1738 Pfam Chromo (CHRromatin Organisation MOdifier) domain 508 562 IPR023780 -
Mtr3g1080 1738 Pfam Domain of unknown function (DUF4208) 1512 1605 IPR025260 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 365 394 - -
Mtr3g1080 1738 Gene3D - 1326 1441 - -
Mtr3g1080 1738 SMART helicmild6 945 1029 IPR001650 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 203 226 - -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 1188 1217 - -
Mtr3g1080 1738 SMART chromo_7 392 475 IPR000953 -
Mtr3g1080 1738 SMART chromo_7 505 564 IPR000953 -
Mtr3g1080 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1105 IPR027417 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 55 99 - -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 169 190 - -
Mtr3g1080 1738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 611 783 IPR014001 -
Mtr3g1080 1738 SMART DUF4208_2 1501 1606 IPR025260 -
Mtr3g1080 1738 CDD CD2_tandem 505 560 - -
Mtr3g1080 1738 Gene3D - 382 506 - -
Mtr3g1080 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 820 IPR027417 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 1676 1738 - -
Mtr3g1080 1738 SUPERFAMILY Chromo domain-like 394 474 IPR016197 -
Mtr3g1080 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 394 473 IPR000953 -
Mtr3g1080 1738 CDD CD1_tandem 392 472 - -
Mtr3g1080 1738 Gene3D - 830 1060 IPR027417 -
Mtr3g1080 1738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 919 1070 IPR001650 -
Mtr3g1080 1738 Coils Coil 1113 1133 - -
Mtr3g1080 1738 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 92 1650 - -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 29 394 - -
Mtr3g1080 1738 Pfam SNF2-related domain 618 887 IPR000330 GO:0005524|GO:0140658
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 1684 1698 - -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 245 262 - -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 100 147 - -
Mtr3g1080 1738 Gene3D - 509 561 - -
Mtr3g1080 1738 Gene3D - 590 829 IPR038718 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 1716 1730 - -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 1190 1217 - -
Mtr3g1080 1738 SUPERFAMILY Chromo domain-like 486 562 IPR016197 -
Mtr3g1080 1738 MobiDBLite consensus disorder prediction 339 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1080 Mtr-Chr3 18407788 18429487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1080 621 1056 RAD5 or RAD16-like Gene Family AT1G02670 25.838 1.29e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr3g1080 SNF2_N 4.9e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1080 K11367 - gmx:100808039 2622.42