Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1077 ATGACAAGCACAATTCTTAGAAGATCCTCTTCCATATTCTCACGGCGTTTCTTCGTCGCCGCCGTCGAGCAACTTCCGATCCGTCACCGTAGCCTCGCCTTGTTGTCCTCCGCCGTCAACGGCAAAGTAGGAGAGAGGCTGTTTCATGCGAAATCTGGACCGTTGAACTTCCACTCGTCGCTGGTATCTCGTGGTGCGCAGCTTGCTGTGGATTACGATCACGCGGAACACGATGATGGTTGCGGTGTCAATGGTGATGAAGGATTGGAGATCGCGAAGCTTGGGATTTCTAAGGAGATCGTGAATGCGTTGGGGAAGAAAGGGATCGCAAAGCTTTTTCCCATTCAGAGAGCTGTGCTGGAACCTGCAATGCAAGGGAGGGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGATAAGATTATTAAGTTTAATGCTAAGAATGGGAAAAGAAGGGATCCTTTGGCTTTGGTGTTAGCACCAACCAGAGAACTTGCACGACAAGTTGAAAAGGAATTCAAGGATGCTGCACCTAACTTGGAAATAATTAGCCTTTATGGGGGTATGCCTATTCAGCAACAAATTAGCAAACTTGGTAGTGGCGTAGATATTGTAGTTGGCACACCTGGACGTGTTATTGATCTTCTCAAAAGGGGTTCACTGAAACTGAAGGATGTTAATTATGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCGGTGGAGACTATCTTGCAGAAGTTGCCTTCAAAGCGTCAAACTCTTATGTTCTCGGCAACAATGCCTTCTTGGATAAAGAATCTTACGCGCAATTACCTAAATAAACCCTTAACAATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCATCTAATGCCTATTCTAAAGCAGGAATTCTTGTACCTCTTATAACAGAACATGCTAAAGGAGGAAAATGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGTCTATCACATATAATGGCAAAAAGCATTAAATGCGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGAGAAAGAACTCTTACTGGCTTTAGAAACAGCTATTTCAATGTTTTGGTGGCAACTGATGTTGCTTCCCGCGGGCTTGATATACCAAATGTTGATCTTGTAATACATTATGAACTTCCAAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGACGTGCCGGTAAGAAAGGAACTGCTATTCTTGTCCACACAGAAAATCAATCCAGGGATGTAAAGACAATTGAGAGAGATGTTGGATGTAAATTCAAAGAGTTACCAAAGATTGCTGTTGAAAGTGGATCAGCAGACATGTTTGGCAGCACGAGTAGTGGTCGATACGGCTCTTCGGGAGGTAGGGATCGTCGATCAAGTAGTAGTTCTGGATCTGGCCGAAATGGCTACGGGAAATCCAGTGGTTTTGGTGGCTCTAGTTCAAGGAAGTCAGGAGGGGGATTTGAGGAATTTTCTGGTAAAACAGATAGATACGGTGGTGGAGGATTTAGCAGTTCAAGTCGTTCTGGTGGCTTTGGAAAGTTCGGCTCAGGTAAATCTGGGAGATATGGTGACAGAAATTGA 1677 0.4371 MTSTILRRSSSIFSRRFFVAAVEQLPIRHRSLALLSSAVNGKVGERLFHAKSGPLNFHSSLVSRGAQLAVDYDHAEHDDGCGVNGDEGLEIAKLGISKEIVNALGKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPLALVLAPTRELARQVEKEFKDAAPNLEIISLYGGMPIQQQISKLGSGVDIVVGTPGRVIDLLKRGSLKLKDVNYVVLDEADQMLQVGFQEAVETILQKLPSKRQTLMFSATMPSWIKNLTRNYLNKPLTIDLVGDSDQKLADGISLYSIASNAYSKAGILVPLITEHAKGGKCIVFTQTKRDADRLSHIMAKSIKCEALHGDISQTQRERTLTGFRNSYFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVHTENQSRDVKTIERDVGCKFKELPKIAVESGSADMFGSTSSGRYGSSGGRDRRSSSSSGSGRNGYGKSSGFGGSSSRKSGGGFEEFSGKTDRYGGGGFSSSSRSGGFGKFGSGKSGRYGDRN* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1077 558 Pfam Helicase conserved C-terminal domain 321 428 IPR001650 -
Mtr3g1077 558 MobiDBLite consensus disorder prediction 469 512 - -
Mtr3g1077 558 MobiDBLite consensus disorder prediction 530 544 - -
Mtr3g1077 558 Gene3D - 312 472 IPR027417 -
Mtr3g1077 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 449 IPR027417 -
Mtr3g1077 558 Gene3D - 90 298 IPR027417 -
Mtr3g1077 558 CDD DEADc 100 295 - -
Mtr3g1077 558 SMART ultradead3 108 311 IPR014001 -
Mtr3g1077 558 Pfam DEAD/DEAH box helicase 113 282 IPR011545 GO:0003676|GO:0005524
Mtr3g1077 558 MobiDBLite consensus disorder prediction 468 558 - -
Mtr3g1077 558 CDD SF2_C_DEAD 308 435 - -
Mtr3g1077 558 SMART helicmild6 348 428 IPR001650 -
Mtr3g1077 558 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 546 - -
Mtr3g1077 558 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 467 IPR001650 -
Mtr3g1077 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 294 IPR014001 -
Mtr3g1077 558 PANTHER RNA HELICASE 3 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1077 Mtr-Chr3 18320679 18327854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1077 75 460 Eukaryotic Initiation Factors Gene Family AT3G19760 32.316 2.41e-66 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1077 - - var:108343286 697.967