Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1072 ATGCAAAGAAGTAAAGGCCGATTTACATCTACCAAGTCCAACCTTGACGAGTCTGCATCGGCTGAAATGAGTTGCGAGGTAAAGAGTGAAGAATCTGCAGATGGTTTTCAAAATGGTGTTCAAAATTTTGCCAAAAAAGTTCGGTATAATGTTCGTAGAGAGGTAGCATTAAGGATGCAAAGAAATAAAGGCCGATTTACATCTGCCAAGTCCAACAATGATGAGTCTGCATCGGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAACGATGGATCCCAACAGCAAGACTATGTTTGTAGGCATTGTAACATCAGTGAGAAGTGCACGCCAAAGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTCTGTGGGCAAATAAGATTTGCAGGAAAAATGGGAGGTAG 435 0.4391 MQRSKGRFTSTKSNLDESASAEMSCEVKSEESADGFQNGVQNFAKKVRYNVRREVALRMQRNKGRFTSAKSNNDESASAEMNCGTSEGLMADNDGSQQQDYVCRHCNISEKCTPKMRRGPEGPRTLCNACGLLWANKICRKNGR* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1072 144 PANTHER GATA TRANSCRIPTION FACTOR 28 42 138 IPR045280 GO:0006355
Mtr3g1072 144 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g1072 144 MobiDBLite consensus disorder prediction 64 81 - -
Mtr3g1072 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 139 - -
Mtr3g1072 144 CDD ZnF_GATA 102 144 IPR000679 GO:0006355|GO:0043565
Mtr3g1072 144 Pfam GATA zinc finger 103 137 IPR000679 GO:0006355|GO:0043565
Mtr3g1072 144 ProSitePatterns GATA-type zinc finger domain. 103 130 IPR000679 GO:0006355|GO:0043565
Mtr3g1072 144 SMART GATA_3 97 144 IPR000679 GO:0006355|GO:0043565
Mtr3g1072 144 Pfam CCT motif 42 69 IPR010402 GO:0005515
Mtr3g1072 144 MobiDBLite consensus disorder prediction 1 23 - -
Mtr3g1072 144 MobiDBLite consensus disorder prediction 62 81 - -
Mtr3g1072 144 Gene3D - 92 143 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1072 Mtr-Chr3 18212874 18216804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1072 42 137 Tify Gene Family AT1G51600 66.667 8.83e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr3g1072 GATA 2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1072 - - mtr:MTR_4g008070 164.466