Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1071 ATGTATTCTCCAAATCTAAACCCTTCCATATCACGCACCATCGTTCCAGCTCCCAACGAGCCGCAAAATTACTACAACAACCCTTTGGCGGGAGAAGCTTCATCATCAAAATCGAAGCAAAATCTTAAAGATGAGAACAAGGAGCTTGTTAGCACTGCGATGGATGGGGATCACCGTCAATGTCGCGAGACGGTCCGAAGAACAAGATTGATTTTGAATTCGATTCCCAAATCGGGACTGCCTGAAGAAGAGAATAATCGTAAGGTCATGAAAGTTTTGAAAGCATTGATGAACAAGTTGAAAGAAGTGAATAATAGTAGGATCAGAAATGATTTGACAGCTGCTACTTCGATGAACGATCATCGTTTGTGTCTATATCATGATAAGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATGTTTTTCTCTATAGAACTGAAATGTGTGTGATTGGTTTACACGGTCAACCACAAGCTGGGATTGATTATTCACATCCTAGTATGAGTACTAATGGGAAACCCGTTGCTACTAGTGTGATTGTGCCTTGTGGATCTGATGATGTTGATCAAGATGACTTTGTTATCAATTCTGGCCAAGGTGATAAGAAGGATCAAAAGTTGCAAGGAGGCAATCTTGCTATGGTGACAAATATGCAATATGAGATTGATGTTAGGGTTATTCGAGGTGTTGAGTATGATGGTGTTCCTGCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAACTAAATATTGGTGGGAAAATGGTGAATCTGGTTTTCGTGTTTATAAGTTTTTGTTATCAAGGGTTAAAGGTCAACCTAAGATCGGTAGTATGATCCTTGAGGAAGCTCGTATGCTTAAGATAGGTCAATTATGTTCTAATTCTATGTATGTTATTTCTCATGATATTTCCAATGGGAAGGAGAATATTGGTGTGAGTTTATATAATGACATTGATAATGATCAATATCCTATGCAATTCGAGTATCTCCCGAAGGCTGCTTTTCCGCAATTCGTGTTGCCTCAGAGCATGACAACAAGGGAGTCGAGGAGGGCGAAAGAGTGTTCTGAATCCGTTGATGGATGCATTTCATCAATCAAGAATGGCAACACTTTTCCTTATAGTAAAAGTGGGATTCTTCTGAAAGGGAGGTCATTAATTTATGAATGCGGTCCTTTTTGTAGTTGTCCTTTGTATTGTAGAAACCGTGTGACACAAAAAGGTCTTGAACATAGGTTAGAAGTGTTTAGATCTAATGAAACTAGTTGGGGAGTTAGGTCTTTGGACCTTATCCTAGCTGGAGAATTTATATGCGAGTTCACTGGACTTGTTTTAACTAGGCAGCAAGTGGAAATTTTAACCATGGATGGTGAACATAACTCATTGATGATAGATCCAAGTCGATTTTTCAATAGTCGCACTCAAGAATGGGGTGATTTATCGAGGATAGATGCTAATCATGTGCCTCCCTCATATCCTCCTTTAGATTTTGCATTGGATATATCAATGATGAGAAATGTTGCCAGCTATATCAGTCATAGCCCAACTCCTAATGTGTTTGTTCAATTAGTTCTCTTTGATCACGATAATTGGAGGTTTCCCCATCTTATGGTATTTGCAATGGAGAACATCCTTCCAATGGGAGAGCTTAGTCTTGATCATGGAAAAGATGCTGGTTTGGATGAGAAATTGACCGGAAAGCTCGCGATATGTAATTGA 1737 0.3903 MYSPNLNPSISRTIVPAPNEPQNYYNNPLAGEASSSKSKQNLKDENKELVSTAMDGDHRQCRETVRRTRLILNSIPKSGLPEEENNRKVMKVLKALMNKLKEVNNSRIRNDLTAATSMNDHRLCLYHDKKIIGPVPGVCIGDVFLYRTEMCVIGLHGQPQAGIDYSHPSMSTNGKPVATSVIVPCGSDDVDQDDFVINSGQGDKKDQKLQGGNLAMVTNMQYEIDVRVIRGVEYDGVPATTSKVFVYDGLYKITKYWWENGESGFRVYKFLLSRVKGQPKIGSMILEEARMLKIGQLCSNSMYVISHDISNGKENIGVSLYNDIDNDQYPMQFEYLPKAAFPQFVLPQSMTTRESRRAKECSESVDGCISSIKNGNTFPYSKSGILLKGRSLIYECGPFCSCPLYCRNRVTQKGLEHRLEVFRSNETSWGVRSLDLILAGEFICEFTGLVLTRQQVEILTMDGEHNSLMIDPSRFFNSRTQEWGDLSRIDANHVPPSYPPLDFALDISMMRNVASYISHSPTPNVFVQLVLFDHDNWRFPHLMVFAMENILPMGELSLDHGKDAGLDEKLTGKLAICN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1071 578 Pfam Pre-SET motif 309 409 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr3g1071 578 ProSiteProfiles Pre-SET domain profile. 357 414 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr3g1071 578 MobiDBLite consensus disorder prediction 1 37 - -
Mtr3g1071 578 ProSiteProfiles YDG domain profile. 133 274 IPR003105 -
Mtr3g1071 578 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 11 567 - -
Mtr3g1071 578 Gene3D SET domain 283 570 IPR046341 -
Mtr3g1071 578 ProSiteProfiles SET domain profile. 417 561 IPR001214 GO:0005515
Mtr3g1071 578 Pfam SAD/SRA domain 132 278 IPR003105 -
Mtr3g1071 578 SUPERFAMILY SET domain 295 563 IPR046341 -
Mtr3g1071 578 Gene3D - 130 282 IPR036987 -
Mtr3g1071 578 SMART G9a_1 128 278 IPR003105 -
Mtr3g1071 578 Pfam SET domain 429 561 IPR001214 GO:0005515
Mtr3g1071 578 SUPERFAMILY PUA domain-like 119 286 IPR015947 -
Mtr3g1071 578 SMART set_7 417 567 IPR001214 GO:0005515
Mtr3g1071 578 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 11 567 - -
Mtr3g1071 578 Coils Coil 86 106 - -
Mtr3g1071 578 MobiDBLite consensus disorder prediction 1 44 - -
Mtr3g1071 578 SMART preset_2 306 401 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1071 Mtr-Chr3 18199190 18200926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1071 3 561 Su(var)3-9 homologs AT1G73100 32.765 8.01e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr3g1071 SAD_SRA 6.7e-36 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1071 K11420 - mtr:MTR_0376s0030 1182.16