Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1058 ATGGCTGAACAAACTGAGAAGACTTATCTCACTAATGGATCATTAGTTTACGAGGCGGCGTCACAGCGAGAAATCGAGAAGGAAGAAATCCGCCAAAAGATTTTGCGGCAGAAAGAATTGGAGGAGGAGGTGTGGAGGGAGCTTGCAATGGAGAGGACGTTTGGAACCATGCAGAGGTCTGTTGATCACATCGGTGTTTCGCAACCATCATTGATTATGGCCCCTCCTGAAATCAAACATTCTACACAGATTCGTAATAACAAGGACAAAATTATTCTATTGGCTAAGCCAGATATGAGTCTCTATAGTGCAAAGCGAAAAGCGGTGACACAAGATGTTCCTAGCGATGAGCCTTCTGCAATTGGTTTGAACAAAAAGCTGAAGGAGGAGTGGAGTTGTGAACTGTGTCGGATTAATGCCACGAGTGAGAATGGCTTGAATGATCATCTGAATGGTAAGAAGCATAAGGCTAGGGAAGCAAGACAGAAAAGGGAGATTGACAAGCACAACAAGAAAGGTCAAAACACTGTGATAAAGGTTACTGATATAGCTGTTAATACAACGGTATCAGAGGTTGATGCAGGAAAAGATCAAAAGACGACTTCTAATTGTTGCATAGCCTTGAAAGTCATGAATGAGAATGTGGTTGATACAAAATCAAAAAATGAGGAGCAACTTTTGGAGACAATGGTGGATAATGGTGAAAGTGTAGCAGAATCTAAAAATGAGAAGGAGCTCGAGGAAATGACGGTTGATGAAAGAGTAACAGAATCTAAATATGAGGAGCAACTTTTGGAGACGGTGTTGGATAATGGTGTAAGTTTAACAGAATCTAAAAATGAGAAGAAGCTCGAGGAAATGACGGTTGATGAAACAGTAACAGAATCTAAAAATGAGAAGAAGCTCGAGGAAATGACAGTTGATGTAAGTGTAACAGAATCTAAAAATGAGAAGAAGCTCGAGGAAATGATGGTTGATGAAACAGTAACAGAATCTAAAATTGAGGAGAAACTTTTGGAGACGGTGTTGGATAATGGTGTAAGTGTAACAGAATCCAAAGATGAGAAGAAGCTCGAGGAAATGACGGTTGATGAAAGAGTAACAGAATCTAAAAATGAGGAGAAACTCAAGGAAATGACGGTTGATGAAAGAGTAACAGAATCTAAAGATGAGAAGAAGCTCGAGGAAATGACGGTTGATGAAAGAGTAACAGAATCCAAAAATGAGAAGAAGCTCGAGGAAATGACGGTTGATGAAAAAGTAACAGAATCTAAAAATGAGGAGCAACATGCGGAGAAAAACCAAAATGTAGATTTTTTTGAGAGTAAAAAAGGTGCTGCAACTGAGGAAGCAGGGAAGAGTGCATTGACAGAAATGATTAAGGCTAGAGGTTTATGGTGTGAGCTCTGTCAAATTGGCACCAACTCACAAGTTGTGATGGAAAGGCATATAAAAGGGAAAAAACACATAAAGAAAATTAATCATTTCAATAATAAAAATGCAAGTCTTTCATCAACATCCTTTGTATCACCACACACTACTGATGGTGTTAAAAAAGAAACAGACCAAATGATGACACACATGACCAATATTAGAGATGGAATATAA 1608 0.3887 MAEQTEKTYLTNGSLVYEAASQREIEKEEIRQKILRQKELEEEVWRELAMERTFGTMQRSVDHIGVSQPSLIMAPPEIKHSTQIRNNKDKIILLAKPDMSLYSAKRKAVTQDVPSDEPSAIGLNKKLKEEWSCELCRINATSENGLNDHLNGKKHKAREARQKREIDKHNKKGQNTVIKVTDIAVNTTVSEVDAGKDQKTTSNCCIALKVMNENVVDTKSKNEEQLLETMVDNGESVAESKNEKELEEMTVDERVTESKYEEQLLETVLDNGVSLTESKNEKKLEEMTVDETVTESKNEKKLEEMTVDVSVTESKNEKKLEEMMVDETVTESKIEEKLLETVLDNGVSVTESKDEKKLEEMTVDERVTESKNEEKLKEMTVDERVTESKDEKKLEEMTVDERVTESKNEKKLEEMTVDEKVTESKNEEQHAEKNQNVDFFESKKGAATEEAGKSALTEMIKARGLWCELCQIGTNSQVVMERHIKGKKHIKKINHFNNKNASLSSTSFVSPHTTDGVKKETDQMMTHMTNIRDGI* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1058 535 Pfam Zinc-finger of C2H2 type 466 489 - -
Mtr3g1058 535 Pfam Zinc-finger of C2H2 type 131 155 - -
Mtr3g1058 535 SUPERFAMILY beta-beta-alpha zinc fingers 115 163 IPR036236 -
Mtr3g1058 535 Coils Coil 23 43 - -
Mtr3g1058 535 MobiDBLite consensus disorder prediction 351 442 - -
Mtr3g1058 535 Gene3D Classic Zinc Finger 123 166 - -
Mtr3g1058 535 PANTHER OS06G0651300 PROTEIN 4 530 - -
Mtr3g1058 535 SUPERFAMILY beta-beta-alpha zinc fingers 461 493 IPR036236 -
Mtr3g1058 535 SMART ZnF_U1_5 462 496 IPR003604 GO:0003676|GO:0008270
Mtr3g1058 535 SMART ZnF_U1_5 128 162 IPR003604 GO:0003676|GO:0008270
Mtr3g1058 535 PANTHER OS06G0651300 PROTEIN-RELATED 4 530 - -
Mtr3g1058 535 Gene3D Classic Zinc Finger 443 495 - -
Mtr3g1058 535 SMART c2h2final6 131 155 IPR013087 -
Mtr3g1058 535 SMART c2h2final6 465 489 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1058 Mtr-Chr3 17764013 17767217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1058 89 292 C2H2 Transcription Factor Family AT2G19380 26.047 1.48e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1058 - - mtr:MTR_3g045840 1006.13