Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1057 ATGGAAGAACCGATGGAGTTGCAATTAGAAGACAATACAACCTCTACGGAGAAAAATAGTAAAAGAAAGCTTAAAACCCCTGCACAGCTTATGGCCTTGGAAAATTTTTATAACGAGCACAAATACCCCACAGAGGAAATGAAAGTTGAACTTGCTAATGAACTAGCGTTGACAGAAAAGCAAATCTCGGGATGGTTTTGTCACAGAAGGTTAAAAGATAAGAGACTGATGAAAGGTGAAGTATGTGCTAATGGACGACAAGATCAATCTAGTGGTGTTGTTCAAGACCGTGTCAGTGGACTAAGGCAAGATTCATGTGGAAGCACTAAGCATGGTGAGTACAGGTGTTTGGATCCCAAAGAGGTTGAGAGTCATGGTCTCTATAATCATGAAGTGTTGGTTGCAGATATGAAATATGTACTTAGAAACCATTGTACAGAAAATGATAGTGAAACGGATAACTCATCACCTGAGAGTAGCTCATCTTTGCAAGAACGGTATTATCTCCAAGGACAGGATCCATATGATATGGAGCTTTCTAGACACGCAACACCAAATGGAGCTCTTCCACCCTTAAATCCTACGGGATATAAACCATCAGGATATTTAAAAGTGAAGAAAGAAATAGAGCATGCTGCTATAACTGCTGTTAAGAATCGGTTAGGAAGGCATTTTCTGGAAGATGGCCCACTACTTAATGTAGATTTTGATACAATTCCTCCAGGGGCATTTGAATTTCAAACTGCAAATCCAGTTAATGAAACATACCATGTTGCAAACCCCTCTCTTTCAAATTCTCCAGAGGACTGTGCCCCAAACAGGCAATCGTGTCTAAACTCTAGTATTGATTTATATATGAACAAATTAAGTTCCCAAGATTTCCAGGATAAGAAATCCCACCAGCTTATTCAACAAAGAACAAATTTTCAGGGTCGTCCAATTCATACCAATCATTTGCCTGGCAAGAACTTTCCTGTGGATTTGAACGTAGACTCAACTGGGGAAGCACCTTCTTATAATGGCACTAGAAATCATAGAATAGGCACTAAGCATGGTGTTGAAAGGATGAGATCTGATTCTGCTTCTAATCCCAATCGCTATCATGAGAATAACCTGGTGATTATGAAGTCAGATCCACTACTACATGGCTACAATAACGGTAATGTCAAGAATGTACAAAGGAGTGGATATATAAAATCCGAACCTTCAAATGCAATGCATAATTCTCGAATTTCTATGGATTCTGAAGAAAGAGGGCTTTCTGAATGGATGGCAAAGGAAGAAAAGTTCAATGGGACTAGAAAGATTAAAAAAGAATATCATGAGTCAGATGGAGTACGAATGCCTTCGAGAGAAATTGTGGTTGCAAAGCGAGCTAAATTTGATTTACTTCATCAATATGATATTAAACAAGAACCTGCTGCTGAGATTGAACCAAGGAAAACTCAGAGATCTGCTGTGGAGTTGCCATCTAGCTTTAGCGAGGATGATGAAACTGCTGAAACCAGTTCCTCCCTGGGTTGA 1524 0.3937 MEEPMELQLEDNTTSTEKNSKRKLKTPAQLMALENFYNEHKYPTEEMKVELANELALTEKQISGWFCHRRLKDKRLMKGEVCANGRQDQSSGVVQDRVSGLRQDSCGSTKHGEYRCLDPKEVESHGLYNHEVLVADMKYVLRNHCTENDSETDNSSPESSSSLQERYYLQGQDPYDMELSRHATPNGALPPLNPTGYKPSGYLKVKKEIEHAAITAVKNRLGRHFLEDGPLLNVDFDTIPPGAFEFQTANPVNETYHVANPSLSNSPEDCAPNRQSCLNSSIDLYMNKLSSQDFQDKKSHQLIQQRTNFQGRPIHTNHLPGKNFPVDLNVDSTGEAPSYNGTRNHRIGTKHGVERMRSDSASNPNRYHENNLVIMKSDPLLHGYNNGNVKNVQRSGYIKSEPSNAMHNSRISMDSEERGLSEWMAKEEKFNGTRKIKKEYHESDGVRMPSREIVVAKRAKFDLLHQYDIKQEPAAEIEPRKTQRSAVELPSSFSEDDETAETSSSLG* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1057 507 MobiDBLite consensus disorder prediction 474 507 - -
Mtr3g1057 507 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 506 - -
Mtr3g1057 507 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 506 - -
Mtr3g1057 507 SUPERFAMILY Homeodomain-like 15 78 IPR009057 -
Mtr3g1057 507 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Mtr3g1057 507 SMART HOX_1 18 80 IPR001356 GO:0003677
Mtr3g1057 507 MobiDBLite consensus disorder prediction 485 507 - -
Mtr3g1057 507 CDD homeodomain 21 75 IPR001356 GO:0003677
Mtr3g1057 507 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Mtr3g1057 507 MobiDBLite consensus disorder prediction 1 23 - -
Mtr3g1057 507 Gene3D - 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1057 Mtr-Chr3 17757207 17763358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1057 6 506 Homeobox Transcription Factor Family AT4G03250 39.963 1.82e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr3g1057 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1057 - - mtr:MTR_3g045830 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1057 3 17757207 17763358 Mtr3g1057 3 17757207 17763358 ECH
Mtr3g1057 3 17757207 17763358 Mtr5g3145 5 40273696 40279129 PCT