Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1040 ATGTCCCTCTCAAGCTCCTCGGATGACTCCTCAGACCAAGAAACCCCTTTCAACACATCGATGAACCTAACAACCGGTGTTGGACGATCCTCCTCTCACCAACAAACACCAACCTCAATTGATTCACCAAACCAGCTACCAACTTCACCACCCTACAAAAAGCCTCGTGGAAGACCACCTGGTTCCAAAAACAAACCAAAACCACCTCTTGTGATAACACAAGACAATGAACAAGCCATGAAACCTGTAGTCATTGAAGTAGCTGCAGGTACAGATGTTCTTGAAGCTGTCATCCAGTTTGCACTCCGTTCTCAAACATGTCTGAGCATTCTCTCTGCTTCTGGCACCATTGCCAATGCTACCATTTATTACCCTCTTTGTCGTGCTCCTTCTTTTACTCTTCATGGTCCTTTTTCTTTGATGAGTTTGACTGGTACTTTTTTGTACCCTCCTTCACCTCCACCACTTCCTATTGGTTGTTGTTCTTCTTCTTCTTCTTCCTCAAACCCTAATGTGAATCCACTGGAAGCACCACCACCGGGTATGACCTTTGGGATTACTCTTGCCGGAGTACAGGGGCAAGTCTTTGGTGGGATTATTGGTGGAAAAGTTATAGCTGGTGGTGATGGGGTTAAGGTTGTCTGTTCTTTGTTTAAGAATCCCGAACTTCATAGAGCTGGTGGTGTTATTCTGGAAGCTGATGATGTTGGTGATGATGATAATAATAATGTTAATGGAAATGGTGGTAGTGGTGGTGATGAAGGTGGTGATCCTGGTGCTAGTAGTAGTGGTGCTGTTGGTGGTGGTGAGAATGTGTCTGGTTTCAATGTTCCTGATCCAATGCCTCTGAATCTAGCACAATCTGATCCTAGCTTCATGCCTTGGAACCAACCCTCTCACCCCCATCCTCCTAATTACTGA 921 0.4528 MSLSSSSDDSSDQETPFNTSMNLTTGVGRSSSHQQTPTSIDSPNQLPTSPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPVVIEVAAGTDVLEAVIQFALRSQTCLSILSASGTIANATIYYPLCRAPSFTLHGPFSLMSLTGTFLYPPSPPPLPIGCCSSSSSSSNPNVNPLEAPPPGMTFGITLAGVQGQVFGGIIGGKVIAGGDGVKVVCSLFKNPELHRAGGVILEADDVGDDDNNNVNGNGGSGGDEGGDPGASSSGAVGGGENVSGFNVPDPMPLNLAQSDPSFMPWNQPSHPHPPNY* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1040 306 Gene3D - 80 235 - -
Mtr3g1040 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 6 301 - -
Mtr3g1040 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 223 - -
Mtr3g1040 306 PIRSF ESCAROLA 2 159 IPR014476 GO:0003680
Mtr3g1040 306 PIRSF ESCAROLA 165 304 IPR014476 GO:0003680
Mtr3g1040 306 MobiDBLite consensus disorder prediction 1 47 - -
Mtr3g1040 306 ProSiteProfiles PPC domain profile profile. 77 242 IPR005175 -
Mtr3g1040 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 301 IPR014476 GO:0003680
Mtr3g1040 306 CDD DUF296 81 217 IPR005175 -
Mtr3g1040 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 215 IPR005175 -
Mtr3g1040 306 MobiDBLite consensus disorder prediction 1 75 - -
Mtr3g1040 306 MobiDBLite consensus disorder prediction 48 66 - -
Mtr3g1040 306 MobiDBLite consensus disorder prediction 233 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1040 Mtr-Chr3 17261255 17262175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1040 36 267 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.615 1.02e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1040 - - cam:101503818 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1040 3 17261255 17262175 Mtr3g1040 3 17261255 17262175 ECH