Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1002 ATGGTGAGGTCTTCAAGTTGTGAAAAAAATAGTGTCATCAAAAGAAGTGTATGGATTGCAGAAGAAGATGCAAAGACACCTTCATTTGTCTCAGAGCATGGATCTGTTAATTTGACTTCTGTCCCTAAAAAAACAGGTGTTAAAAGGTATGGAAAAAGTTGCAGGCTTAGGTGGAGTAACTCCATGTCTGATCCAAAGCATGATGATAAGTTCACATCCCAAGAAGAAGATCTAATTGTTAAGCTTCATGCAGCCATAGGTAGTAGGTGGTCTATCATAGCTCAACAACTACCTGGGAGAACAGACAATGATGTTAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTGTCTCAAATGGGGATAGACCCTGTTACTCACAAGCCTTTCTCTAAACTAATTGTTGATTATGGAAATATAGGTGGTGCTAATTGTCATATTAATCAAGACTTTAGGAATCAAAGATTGATCAGAAACACAAATGACCTATCAAAGCAATTGCCACCCAAAATGGAAACAGTTATGAATCTTTGTCAGTTCCAAACCAGTAATAATAATAACCCAACATCAATGTTTGTGGAAGCATTCTTGTCGTCGTCGTCGTCAACACCATTACCTACCTTATCTCCTTGTTCCTCCACTTCAACACAAGAAACAAACTTTTCTGCACCATTTAGTTGGAATGACTTTCTTCTACAAGATGCTTTTTCACAAGATGCACCTACTAATAACCTGCAAGAACAACAAATTTTAGGTGGATTGTTATCAAAGAAAGAGGTCGTGTCACACCAAGTCTCATCATCCTCGGACATTTCATTCGTAGAGACCATACTCGATCAAGAAAATGAGATGTTTCTAAGCTTTCCCGAACTTTTGGAGGAACCATCCAATTACTAA 897 0.379 MVRSSSCEKNSVIKRSVWIAEEDAKTPSFVSEHGSVNLTSVPKKTGVKRYGKSCRLRWSNSMSDPKHDDKFTSQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIVDYGNIGGANCHINQDFRNQRLIRNTNDLSKQLPPKMETVMNLCQFQTSNNNNPTSMFVEAFLSSSSSTPLPTLSPCSSTSTQETNFSAPFSWNDFLLQDAFSQDAPTNNLQEQQILGGLLSKKEVVSHQVSSSSDISFVETILDQENEMFLSFPELLEEPSNY* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1002 298 Gene3D - 7 67 - -
Mtr3g1002 298 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr3g1002 298 SMART sant 67 115 IPR001005 -
Mtr3g1002 298 SMART sant 14 64 IPR001005 -
Mtr3g1002 298 PANTHER F14D16.11-RELATED 1 298 - -
Mtr3g1002 298 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr3g1002 298 Gene3D - 69 129 - -
Mtr3g1002 298 SUPERFAMILY Homeodomain-like 48 121 IPR009057 -
Mtr3g1002 298 PANTHER F14D16.11-RELATED 1 298 - -
Mtr3g1002 298 CDD SANT 70 113 IPR001005 -
Mtr3g1002 298 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Mtr3g1002 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1002 Mtr-Chr3 16008317 16010768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g1002 1 294 MYB Transcription Factor Family AT3G28470 38.554 1.77e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g1002 Myb_DNA-binding 7.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1002 K09422 - gmx:100795381 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1002 3 16008317 16010768 Mtr3g1002 3 16008317 16010768 ECH