Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0988 ATGGTCAGGTCATGGTTGCTGGATCTAGACACTACATCCGCATATCTTTTGCGGAAGGAAGATGAATTTGAAGCAACAAGAATCATGAAAGTGGAGATGGAAAATTCAACAACGACTGAATCGTCTGTACCTGTTTCTGATATTCAAGATCAAAACCCTCTAGTTTCGTCCCAGCCAACTCAACCACCGGTTATTACTCCTGTCTTGCCACCTCTGGCTCCAATTCCTACAGCTCCTTCCTCTCTTGTCCGACCTCTGGCACCGCTCCCAATCCGCCCACCGGTTATTAGGCCGCCGGTACCGCAAAATGGCGAGGTTGGGTCTAGTGATTCTGATTCGGATGATGATGATGGTGCAGCCACCAGAATTAATAAGGGTACTGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGGCAGGAGAAAGCCATGCAAGACCTTATGATGAGGAGGCGAGCTGCTGCTCTTGCTGTTCCCACCAATGACATGGCAGTGAGGGCCCGTCTTCGCCATCTTGGTGAGCCGATTACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGATAGGTTGCGGATGATTATGGCAAAGCTGGATGCGGATGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTCTGCTCCAAAAGATGAGGCTGAGGATGATCTGCAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTTGATGCAAGGATTGATATTGCGAAATATTCTTTAGTAAAGGCCGCATTGCGTATTCAACGTGCCCAGAGAAGAAGAGAGGATCCGGATGAAGATGTGGATGCGGAGATTGATTGGACATTGAAGCAGGCAGCGAATTTGAATCTTGAATTCAGTGAAATCGGAGATGATCGACCACTTACTGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACCTGTTCTTTCACTGGAGCTACCAAGTTGTGGAGCATGCCTAATGTTAAAAAAGTTTCTACCTTGAAGGGGCACACCCAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAAAAATCATTTAGCAACTGCCTCTGCTGACCGGACAGCAAAGTATTGGAATGATCAAGGAGCTCTTTTGGGAACATTTAAGGGTCATCTTGAACGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGCACTGCTAGCTACGACAAGACATGGAGGTTATGGGATGTTGAAACAGAAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGATTTCCATCATGATGGATCGTTAGCTGCGTCTTGTGGACTAGACGCTCTGGCTCGTGTATGGGACCTTCGAACTGGGAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAATCGATTCTTGGCATCAGTTTTTCTCCCAATGGATATCATTTAGCCACCGGTGGTGAAGATAACACTTGTCGTATTTGGGACTTGAGGAAGAAGAAGTCTTTGTACACCATTCCCGCGCACTCTAATCTAATATCACAGGTCAAATTTGAGCCACAGGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACGGCCAAGGTTTGGTCAGGCCGGGACTTTAAGCCTGTGAAGACACTATTGGGACATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGTGGGTATATTGTTACCGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCGGCACTACTAGTGAGCATGCTATGGATGTTGACTAA 1782 0.4725 MVRSWLLDLDTTSAYLLRKEDEFEATRIMKVEMENSTTTESSVPVSDIQDQNPLVSSQPTQPPVITPVLPPLAPIPTAPSSLVRPLAPLPIRPPVIRPPVPQNGEVGSSDSDSDDDDGAATRINKGTGEYEISEESRLVRERQEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARIDIAKYSLVKAALRIQRAQRRREDPDEDVDAEIDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSFTGATKLWSMPNVKKVSTLKGHTQRATDVAYSPVHKNHLATASADRTAKYWNDQGALLGTFKGHLERLARIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQEGHSRSVYGLDFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLLGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGTTSEHAMDVD* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0988 593 Gene3D - 464 591 IPR015943 GO:0005515
Mtr3g0988 593 Gene3D - 277 463 IPR015943 GO:0005515
Mtr3g0988 593 ProSitePatterns Trp-Asp (WD) repeats signature. 483 497 IPR019775 -
Mtr3g0988 593 Gene3D - 139 207 IPR036285 -
Mtr3g0988 593 SUPERFAMILY PRP4-like 146 201 IPR036285 -
Mtr3g0988 593 Coils Coil 199 219 - -
Mtr3g0988 593 Pfam pre-mRNA processing factor 4 (PRP4) like 168 194 IPR014906 -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 421 IPR001680 GO:0005515
Mtr3g0988 593 Pfam WD domain, G-beta repeat 423 454 IPR001680 GO:0005515
Mtr3g0988 593 Pfam WD domain, G-beta repeat 502 539 IPR001680 GO:0005515
Mtr3g0988 593 Pfam WD domain, G-beta repeat 544 581 IPR001680 GO:0005515
Mtr3g0988 593 Pfam WD domain, G-beta repeat 461 496 IPR001680 GO:0005515
Mtr3g0988 593 Pfam WD domain, G-beta repeat 375 412 IPR001680 GO:0005515
Mtr3g0988 593 Pfam WD domain, G-beta repeat 334 371 IPR001680 GO:0005515
Mtr3g0988 593 ProSitePatterns Trp-Asp (WD) repeats signature. 399 413 IPR019775 -
Mtr3g0988 593 SMART pr04_2 163 216 IPR014906 -
Mtr3g0988 593 SUPERFAMILY WD40 repeat-like 290 580 IPR036322 GO:0005515
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 417 - -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 581 IPR001680 GO:0005515
Mtr3g0988 593 MobiDBLite consensus disorder prediction 92 135 - -
Mtr3g0988 593 CDD WD40 302 581 - -
Mtr3g0988 593 MobiDBLite consensus disorder prediction 115 135 - -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 463 IPR001680 GO:0005515
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 371 IPR001680 GO:0005515
Mtr3g0988 593 PANTHER WD40 REPEAT PROTEIN 128 585 - -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 549 581 - -
Mtr3g0988 593 PRINTS G protein beta WD-40 repeat signature 399 413 IPR020472 -
Mtr3g0988 593 PRINTS G protein beta WD-40 repeat signature 483 497 IPR020472 -
Mtr3g0988 593 PRINTS G protein beta WD-40 repeat signature 568 582 IPR020472 -
Mtr3g0988 593 MobiDBLite consensus disorder prediction 35 61 - -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 459 - -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 539 - -
Mtr3g0988 593 ProSitePatterns Trp-Asp (WD) repeats signature. 441 455 IPR019775 -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 548 IPR001680 GO:0005515
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 371 - -
Mtr3g0988 593 SMART WD40_4 289 328 IPR001680 GO:0005515
Mtr3g0988 593 SMART WD40_4 373 412 IPR001680 GO:0005515
Mtr3g0988 593 SMART WD40_4 331 371 IPR001680 GO:0005515
Mtr3g0988 593 SMART WD40_4 457 496 IPR001680 GO:0005515
Mtr3g0988 593 SMART WD40_4 415 454 IPR001680 GO:0005515
Mtr3g0988 593 SMART WD40_4 499 539 IPR001680 GO:0005515
Mtr3g0988 593 SMART WD40_4 542 581 IPR001680 GO:0005515
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 464 498 - -
Mtr3g0988 593 ProSiteProfiles Trp-Asp (WD) repeats profile. 464 505 IPR001680 GO:0005515
Mtr3g0988 593 PANTHER BNAC04G01920D PROTEIN 128 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0988 Mtr-Chr3 15783112 15787615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0988 384 580 U-box Gene Family AT2G33340 22.172 4.49e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0988 K12662 - gmx:100788948 881.322