Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0986 ATGATGTCAAGGAGGGCAACATTCTGGTGTCATACATGCAGGGAGCCAATCTTGCTTGCAGGGAGGGATGCAGTTTGCCCTTACTGCGATGGAGGATTTGTGCAAGAAATGCATGAGAATCGAGGACTTGCATCGTCATCACAGTTGGAAGAGTTTCAAGATGATCCTGATATTTTCGATGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAATTGGGTTTAGAGATGCTATTGATAGTTACATGAGGCAGAGAATGGATGGAAGAACCACAAACTTTGATGTCAGAAGGAGATCTGTTTCTGGTTCTGTTCCTGAACAAACTTGGGGTGTTTTTAGTTCTTCTGGTCGTTATTTAATATTTCAAGGTCAAACACCTACTTCTAGAGGTGATCCTAGACGCTCTGATTTTGGTGGCTACTTTATGGATCACGGACTAGATGAACTTATCGAACAACTCAATACAAACGGTTGTGGTCCAGCCCCGGCCTCACGATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATCTTCACTCCGATTCACATTGTCCAATTTGTATAGAAAGGTTTGAACTCGGTTCTAAGGCAAGGGAGATGGCATGTAAGCATATTTACCACTCGGACTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTATGCCGTGTTGAGCTGCCGCCTCATGGACGTGGTAGTCGAAACTGGGGAGGAAGGAATGACAATAGTACTGGTCAAAACAATAATGGCCGAGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCATTTCGTTCTTCCAATTCAAATACTAATCATTGA 843 0.4282 MMSRRATFWCHTCREPILLAGRDAVCPYCDGGFVQEMHENRGLASSSQLEEFQDDPDIFDAIHAVVSQRGSVPRIGFRDAIDSYMRQRMDGRTTNFDVRRRSVSGSVPEQTWGVFSSSGRYLIFQGQTPTSRGDPRRSDFGGYFMDHGLDELIEQLNTNGCGPAPASRSSIEAMPTIKITQAHLHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSRNWGGRNDNSTGQNNNGRGRRNPFSFLWPFRSSNSNTNH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0986 280 PANTHER OS03G0351800 PROTEIN 2 280 - -
Mtr3g0986 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 280 - -
Mtr3g0986 280 MobiDBLite consensus disorder prediction 244 280 - -
Mtr3g0986 280 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Mtr3g0986 280 SUPERFAMILY RING/U-box 170 237 - -
Mtr3g0986 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 237 IPR013083 -
Mtr3g0986 280 Pfam Ring finger domain 189 231 IPR001841 -
Mtr3g0986 280 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Mtr3g0986 280 MobiDBLite consensus disorder prediction 238 280 - -
Mtr3g0986 280 SMART ring_2 190 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0986 Mtr-Chr3 15720200 15722844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0986 133 272 C3H Transcription Factor Family AT1G68180 36.620 4.28e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0986 K11982 - cam:101496968 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0986 3 15720200 15722844 Mtr5g3099 5 39692954 39697996 PCT