Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0975 ATGTCTCCTCCCATAACAAGTTTGTTGAATGTTCGTCCACCGAGAATGGCGTGGAATATCAGGGTAAGGGTTGTTAGACTTTGGAGGATTATGAGTTCGTTGGTGCGTGGTAGGGTGATTTTCATGGAGATGGTGCTGCTTGATCAAGATGGGAATAGGATCCAAGCAACAATTCCTCCAGACTGTGTTGATCGTTTCCAGAATACTTTTCATGAGAACCGTGTTTACATGTTCTCTAATTTCAAGGTTTTACCAAATGATCGTTCTACGAGGGTCACTTCCCATAATCATAGGCTGAAACTCTGGGAGGAGACTGTGGTTGTCAATCATGATGGTTATATCATCCAAAGGTTTGGTTTCTCCTTCTTTTCATCTGCTCAGATCTTGGAACATCAACATGGATGTGGTCATTTAATTGATGTGTTTGGTCTATTGACATCTCTCCACTATGATTTCGTTGTTGATGCTAGACAGAACCTTGCCACAATTGCTAGGGGAACTATTGAGTGTGTGTTGTATGGGAGATTCATAGGTTTCTTCAAGGGTCTGCTGAGTCGGTTTGGATCTGCTCTTCCAGTGGTTGTCATTCAATTTGCCAAAATTTGCAAGGAGCGAGGCCGCGTTGTTGTTAGGAGTGTTAGGGATATTTCAAGGATCATGCTCGATCCCCCTGTTGCTGAGGTTGCTAGGTGGAAGAATGGGCTGGTGTTGTCTCTGAGAAGATATGACATTGATCGTGTTCACGTTAATCCTTCGATCAATGAATTTGAGTCCTCCCAGTTTAATCGCTCTTTTCCAAGGAAAACATTGGAGGGTTTGCTTGCCACCCCCGAGGAAGGCTTATTTGTAGTACTTGCAAAGGTTGTTGATCTTTATCATGTTGAAAAGTGCTGGTATGCTTTGTGCCGTTGTGGTAGGTTGATGAATCAGGGGACTGGTTTATATGTTTGTGGTCAATGCAACCTGACAAACTTCAACATTTCTTGCAAGTAA 993 0.43 MSPPITSLLNVRPPRMAWNIRVRVVRLWRIMSSLVRGRVIFMEMVLLDQDGNRIQATIPPDCVDRFQNTFHENRVYMFSNFKVLPNDRSTRVTSHNHRLKLWEETVVVNHDGYIIQRFGFSFFSSAQILEHQHGCGHLIDVFGLLTSLHYDFVVDARQNLATIARGTIECVLYGRFIGFFKGLLSRFGSALPVVVIQFAKICKERGRVVVRSVRDISRIMLDPPVAEVARWKNGLVLSLRRYDIDRVHVNPSINEFESSQFNRSFPRKTLEGLLATPEEGLFVVLAKVVDLYHVEKCWYALCRCGRLMNQGTGLYVCGQCNLTNFNISCK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0975 330 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 1 54 - -
Mtr3g0975 330 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 46 229 - -
Mtr3g0975 330 SUPERFAMILY Nucleic acid-binding proteins 4 109 IPR012340 -
Mtr3g0975 330 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Mtr3g0975 330 PANTHER REPLICATION FACTOR A 1, RFA1 46 229 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr3g0975 330 PANTHER REPLICATION FACTOR A 1, RFA1 1 54 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr3g0975 330 CDD RPA1_DBD_A_like 20 107 - -
Mtr3g0975 330 Gene3D - 3 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0975 Mtr-Chr3 15389510 15392215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0975 2 321 Core DNA Replication Machinery Family AT5G45400 22.254 3.64e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0975 - - mtr:MTR_3g044760 567.385