Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0956 ATGGCGGCTGAGAGAAACAACACACGGAAGAGAAAGAAGGATGAAATCAAGAAAGACGAAAAACCTAACATGACCTTCTCGAAACAGAAACTCGGAATTTTCAACAAAGCAATAGAGCTATCTATTCTATGCGAATCAGAAACTGCACTCATCGTAATATCACCAGACGAAAACAAGCTCTATGAATGTGGCTACCCTAACTATGACGCTGTCATTCAACGTTTTCTGACCGGACATACGGACGAGAATGAGAAAAAGAATCAACAAGATGATGACATTGTTGAAACCCTAAGGCTTCGATACGAAGCGATGCAAGGAAAACTTAACGAAGAACAGGAGAAATTGGAGAAATTGAAAGCTACTGAGGCACAAAAGAGTAATTCTGATTTCCCATATGATTGGTGGAATAAATCTATTGATGATATGGATTTAACATCTCTTGAAGATATTACCACTTCTTTGGATAAATTGAAGATTAATTTATCAGTAGCAAGCCAAGCCAAGAAGTTCAATTTACATCCAATTCAAGAGAATGTGTGTTAA 543 0.3738 MAAERNNTRKRKKDEIKKDEKPNMTFSKQKLGIFNKAIELSILCESETALIVISPDENKLYECGYPNYDAVIQRFLTGHTDENEKKNQQDDDIVETLRLRYEAMQGKLNEEQEKLEKLKATEAQKSNSDFPYDWWNKSIDDMDLTSLEDITTSLDKLKINLSVASQAKKFNLHPIQENVC* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0956 180 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 176 - -
Mtr3g0956 180 SUPERFAMILY SRF-like 9 78 IPR036879 GO:0003677|GO:0046983
Mtr3g0956 180 Gene3D - 19 98 IPR036879 GO:0003677|GO:0046983
Mtr3g0956 180 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g0956 180 ProSiteProfiles MADS-box domain profile. 6 54 IPR002100 GO:0003677|GO:0046983
Mtr3g0956 180 PANTHER MADS BOX PROTEIN 8 176 - -
Mtr3g0956 180 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Mtr3g0956 180 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Mtr3g0956 180 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Mtr3g0956 180 Coils Coil 94 128 - -
Mtr3g0956 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677|GO:0046983
Mtr3g0956 180 SMART madsneu2 9 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0956 Mtr-Chr3 14951356 14951898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0956 8 170 Type I MADS-box Gene Family AT5G60440 30.233 3.60e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr3g0956 SRF-TF 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0956 - - mtr:MTR_2g045020 181.415