Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0954 ATGGATTACTACAACGTTCTGAAAGTGAACAGATACGCAACAGAAGAAGAGTTAAAAACATCTTACAAAAGATTAGCTTTAATACATCACCCAGACAAACATCCTCCTGAAAAAAGAATCGAAGCTGAACACAGATTTATTCTCATTTCTCAAGCTTATGATATTCTCAGTAATCCCGTAAAGCGGAAAATCTACGACCAATACGGTGAAGAAGGCCTTCAATACGGTGGCGCCGCCCCTCCCCAACATTCTTCTTCTTCTCGCCAACATTGTTCTTCTTCTCGCCGCAACGCTCAATCTTCAACGTATCAGTGTAACCCTCGTTCTGCTGACGATATTTACAATGATTTCTTTCGTCGTGAGAATGGTTCGGAAGTTTTGAAAAATTTGAAAAAGAAAGATGATCCTATTGAGAGAATGTTGTTTTTCACTCTTGAAGAATTGTATAATGGGACAAGTAGAAGGGTAAAGATTACCAGAACCGTAATTAATAATGCTGGGTATAGTAATATTGAGGAGGAGGTGTTGACTGTTGATGTAAAAGCTGGATGGAAAAAAGGGACAAAGGTTACTTTCAACGAGAAGGGTGACAAGAAACCTGGCATCATCCCAGCTGATATTGTTTTTGTGATCGGAGAGAAACCACACGCTCGTTATACTAGGAATGGAAATGATCTTGTGATTACAGAAAAGATAACTGTGGCGGATGCTCTCACAAATAAAACATTGGAAATCCCTGCTTTGGATGGGAGGAGTCTTTTGATCCAGTTGCCAAATGTAGTCACACCTGACTATGAGCACAAAGTCCCCAATGAAGGGATGCCAATAACCAAACAACCAGGGAGGAAAGGGACTTTAAAAATCAAATTTGACATCAAGTATCCCTCAAGGTTAACTCCTCAGCAAAAATCTGATCTAAGGAGTGTCTTAAGTTGA 936 0.3985 MDYYNVLKVNRYATEEELKTSYKRLALIHHPDKHPPEKRIEAEHRFILISQAYDILSNPVKRKIYDQYGEEGLQYGGAAPPQHSSSSRQHCSSSRRNAQSSTYQCNPRSADDIYNDFFRRENGSEVLKNLKKKDDPIERMLFFTLEELYNGTSRRVKITRTVINNAGYSNIEEEVLTVDVKAGWKKGTKVTFNEKGDKKPGIIPADIVFVIGEKPHARYTRNGNDLVITEKITVADALTNKTLEIPALDGRSLLIQLPNVVTPDYEHKVPNEGMPITKQPGRKGTLKIKFDIKYPSRLTPQQKSDLRSVLS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0954 311 SUPERFAMILY HSP40/DnaJ peptide-binding domain 137 216 IPR008971 GO:0006457|GO:0051082
Mtr3g0954 311 Pfam DnaJ C terminal domain 141 295 IPR002939 -
Mtr3g0954 311 ProSitePatterns Nt-dnaJ domain signature. 46 65 IPR018253 -
Mtr3g0954 311 Pfam DnaJ domain 2 66 IPR001623 -
Mtr3g0954 311 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 310 - -
Mtr3g0954 311 SMART dnaj_3 1 61 IPR001623 -
Mtr3g0954 311 MobiDBLite consensus disorder prediction 79 107 - -
Mtr3g0954 311 Gene3D - 133 215 - -
Mtr3g0954 311 PRINTS DnaJ domain signature 4 22 IPR001623 -
Mtr3g0954 311 PRINTS DnaJ domain signature 22 37 IPR001623 -
Mtr3g0954 311 PRINTS DnaJ domain signature 41 61 IPR001623 -
Mtr3g0954 311 PRINTS DnaJ domain signature 61 80 IPR001623 -
Mtr3g0954 311 PANTHER HEAT-SHOCK PROTEIN DNAJ 1 310 - -
Mtr3g0954 311 SUPERFAMILY Chaperone J-domain 1 84 IPR036869 -
Mtr3g0954 311 Gene3D DnaJ domain 1 129 IPR036869 -
Mtr3g0954 311 ProSiteProfiles dnaJ domain profile. 2 69 IPR001623 -
Mtr3g0954 311 MobiDBLite consensus disorder prediction 75 107 - -
Mtr3g0954 311 CDD DnaJ 2 58 IPR001623 -
Mtr3g0954 311 CDD DnaJ_C 144 298 - -
Mtr3g0954 311 SUPERFAMILY HSP40/DnaJ peptide-binding domain 219 304 IPR008971 GO:0006457|GO:0051082
Mtr3g0954 311 Gene3D - 216 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0954 Mtr-Chr3 14931320 14935731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0954 3 68 C2H2 Transcription Factor Family AT1G74250 36.232 1.63e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0954 K09510 - mnt:21393393 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0954 3 14931320 14935731 Mtr3g0954 3 14931320 14935731 ECH