Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0948 ATGTCTAGTAGGAGGTCGCGGTCACGGCAAACAAGTAGCTCGAGGAATATCACCGACGATCAGATCCATGATCTTGTCTCCAAGTTGCAGCAACTTCTTCCTGAGATTCGCAATAGGAGCTCTGACAAGGTTTCAGCTTCGAGGGTATTGCAGGAGACTTGCAACTATATTAGAAACTTGAACAGGGAAGTCGACGACCTAAGCGAGCGTTTGTCTGAGCTATTGGCTACAACAGACACAGCACAAGCAGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4516 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLATTDTAQAAIIRNLLMQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0948 92 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g0948 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Mtr3g0948 92 Coils Coil 50 77 - -
Mtr3g0948 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Mtr3g0948 92 CDD bHLH_AtPRE_like 17 77 - -
Mtr3g0948 92 Gene3D - 18 88 IPR036638 GO:0046983
Mtr3g0948 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Mtr3g0948 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mtr3g0948 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0948 Mtr-Chr3 14824982 14826514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0948 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 73.118 4.80e-40 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g0948 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0948 - - gmx:100527636 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0161 7 2630061 2633118 Mtr3g0948 3 14824982 14826514 ECH
Mtr6g0277 6 3334846 3337859 Mtr3g0948 3 14824982 14826514 ECH
Mtr5g1584 5 17137996 17139346 Mtr3g0948 3 14824982 14826514 ECH
Mtr8g1776 8 26723975 26726283 Mtr3g0948 3 14824982 14826514 ECH
Mtr3g0948 3 14824982 14826514 Mtr3g0948 3 14824982 14826514 ECH