Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0927 ATGTTTGATGCGTTTTGCAGAGACTGCAACCAAGCGACGGATGTGGTGTTTGACCACTCCGCCGGCAATGCAGTCTGTTCAGAGTGTGGTCTTGTCTTGGGATCTCACTCCATCGATGAAACCTCCGAGTGGCAAACCTTCTCTAACGACTACGGCAATAATGGTAGTCCCAGTAACCCTCTCATCGTCGATGATGGTCTCTCCAACGTCATTGCTAAGTCGAACGGAGCATCCAGTGATGTTCCCTCATCGTCTCTTGGTCGTTGGCAGAATAGTAGTTCTAATCCCGATCTAGGATTGATCGTTTCGTTCCAAACTATTGATATTATGGCTGAGAAGTTGGGACTGGTTCCCACCATTAAGGACCGAGCTAATGAGATATATAAGCGGGTTGAAGATCAGAAGTCTAGTAAGGGAAGAAATCAGGAAGCATTATTGGCTGCTTGCGTCTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTATAAAGGAAATTTGTTTGATTGCCAATGGAGCCACCAAGAAGGAAATTGTCCGCGCAAAAGAATACATAGTGAAACAACTGGGTTTAGAGAATGGTGGTCAATCTATTGAAATGGGAATAATTCATATTGGGGACTTTATGGGACGATTTTGTTCTAATCTTGGTATGAATCATCAAGCTGTTAAAGCTGCTACGGAATCTGTTCAGAATTCAGAAGAATTTGATATAAGGAGAAGTCCCATATCAATTGCTGCAACAGTTATATACATCATAACTCATCTTTCGGATGATAAAAAATCCCTGAGAGATATATCAGTTGCTACAGGAGTTTCGGAAGGAACCATTAGGAACACATACAAGGATATCTTTCCCCATGTTTCAAAGATAATACCAACCTGGTATGCTAAGGAAGAGGATCTCAAGAACCTGCAACCCTTGAAACTAAACAGCAAAAGAGTTGATGAAATGGTTGAGGTCGGGATGGTTGATGAGATTCGAGAATATTTTGTATCTGGGGCAGACAACTCAAAGGGAATTAGAAGGGTAATTGGGGTTCCTGAAATTGATTATTTTTTTGAGATAGTAAAGAAAAACACCATTGATGATGCTAAAAAAGAAAAGATATTGAACAAAGCTATCAGAAAAACCAAACACAGCACTTGCATATTGGCTAAAAATCAACTCTTGAAGGAATATGGCTCTTATGCTTGGATCGATAGTGTACAAAATTGA 1218 0.408 MFDAFCRDCNQATDVVFDHSAGNAVCSECGLVLGSHSIDETSEWQTFSNDYGNNGSPSNPLIVDDGLSNVIAKSNGASSDVPSSSLGRWQNSSSNPDLGLIVSFQTIDIMAEKLGLVPTIKDRANEIYKRVEDQKSSKGRNQEALLAACVYIACRQEDKPRTIKEICLIANGATKKEIVRAKEYIVKQLGLENGGQSIEMGIIHIGDFMGRFCSNLGMNHQAVKAATESVQNSEEFDIRRSPISIAATVIYIITHLSDDKKSLRDISVATGVSEGTIRNTYKDIFPHVSKIIPTWYAKEEDLKNLQPLKLNSKRVDEMVEVGMVDEIREYFVSGADNSKGIRRVIGVPEIDYFFEIVKKNTIDDAKKEKILNKAIRKTKHSTCILAKNQLLKEYGSYAWIDSVQN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0927 405 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 312 392 - -
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 50 71 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 147 166 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 174 189 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 208 226 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 240 256 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PRINTS Transcription initiation factor IIB signature 272 286 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 Gene3D - 205 306 - -
Mtr3g0927 405 CDD CYCLIN 201 284 IPR013763 -
Mtr3g0927 405 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Mtr3g0927 405 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Mtr3g0927 405 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 306 IPR000812 GO:0006352|GO:0070897
Mtr3g0927 405 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 306 - -
Mtr3g0927 405 Pfam Transcription factor TFIIB repeat 100 171 IPR013150 GO:0017025
Mtr3g0927 405 Pfam Transcription factor TFIIB repeat 206 284 IPR013150 GO:0017025
Mtr3g0927 405 SUPERFAMILY Cyclin-like 203 305 IPR036915 -
Mtr3g0927 405 CDD CYCLIN 110 180 IPR013763 -
Mtr3g0927 405 SUPERFAMILY Cyclin-like 104 191 IPR036915 -
Mtr3g0927 405 SMART cyclin_7 207 286 IPR013763 -
Mtr3g0927 405 SMART cyclin_7 105 187 IPR013763 -
Mtr3g0927 405 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Mtr3g0927 405 Pfam IPP transferase 255 390 - -
Mtr3g0927 405 ProSitePatterns Transcription factor TFIIB repeat signature. 139 154 IPR023486 -
Mtr3g0927 405 Gene3D - 5 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0927 Mtr-Chr3 13962336 13963817 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0927 313 356 C2H2 Transcription Factor Family AT2G27760 43.182 7.32e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0927 K03124 - zju:107431640 484.952