Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0925 ATGATGGTGAGACCACCTTGCTGTGAGAAAATTGGGGTTAAGAAAGGACCTTGGACTCCAGAGGAGGATATAATTTTGGTATCATACATTCAAGAACATGGACCTGGAAATTGGAGATCAGTTCCCACCACTACAGGTTTGATGAGATGCAGTAAAAGTTGCAGACTTAGATGGACTAATTATCTTAGACCTGGTATCAAAAGAGGTAATTTCAATGACCATGAAGAAAAAATGATAATCCACCTTCAAGCGCTTTTAGGAAATAGATGGGCTGCCATAGCTTCCTATCTTCCAGAAAGAACAGACAATGACATCAAAAACTATTGGAATACACATTTGAGGAAAAAGCTTAAGAAGATTAATCAAACAGGTGATGAAAATGAAGTAGAAGAAAACTCTATTCCTCAAGTAAAAGGTCAATGGGAGAGAAGACTTCAAACAGATATCCATATGGCAAAACAAGCTTTGTGTGAGGCACTTTCTCTTGACAAGCCAACACCTATTTTAGCTGAAAATCAAACATCCCCTTATGCATCAAACACCGAAAACATAGCTAGATTACTCGAAAAGTGGATGAAAAAACCCGAAAATTCAGTCGAGACAACAAATTCAGGAAACTCCATTATGGTAGTAACAGGATCCGGTTCTAGGGAAGGAGGACAGAATACTATAGCATGCAAACAAAAAGATCAAGCATTTGATTCTTTGGTGAGTTTTAATTCATTAAATTCTGATTGTTCTCAATCTGTGTCGGTCGAAGAAAAAAATTTCTTGGCAATGGATTCATGCTTTTTTCAATATCAAAGTAAGCCAAACCAGGAAACTCAAGACCCTCTCATGTTTATGGAGAATTGGCCTTTTGATGATGAGGCTGCTCAGTGCAATGAAGATCTAATGAACGTTTCAATGGAGGAAAATACACCAGGGTTGTTTTAG 936 0.3771 MMVRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTTTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLRKKLKKINQTGDENEVEENSIPQVKGQWERRLQTDIHMAKQALCEALSLDKPTPILAENQTSPYASNTENIARLLEKWMKKPENSVETTNSGNSIMVVTGSGSREGGQNTIACKQKDQAFDSLVSFNSLNSDCSQSVSVEEKNFLAMDSCFFQYQSKPNQETQDPLMFMENWPFDDEAAQCNEDLMNVSMEENTPGLF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0925 311 Gene3D - 70 140 - -
Mtr3g0925 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mtr3g0925 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Mtr3g0925 311 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr3g0925 311 SMART sant 14 64 IPR001005 -
Mtr3g0925 311 SMART sant 67 115 IPR001005 -
Mtr3g0925 311 PANTHER - 2 297 - -
Mtr3g0925 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr3g0925 311 CDD SANT 70 113 IPR001005 -
Mtr3g0925 311 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr3g0925 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 297 - -
Mtr3g0925 311 CDD SANT 17 62 IPR001005 -
Mtr3g0925 311 Gene3D - 14 67 - -
Mtr3g0925 311 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mtr3g0925 311 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0925 Mtr-Chr3 13794187 13796485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0925 2 293 MYB Transcription Factor Family AT5G62470 50.838 6.69e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g0925 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0925 K09422 - gmx:100807020 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0925 3 13794187 13796485 Mtr3g0925 3 13794187 13796485 ECH