Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g0916 ATGGCGGATTCAATGGTGGATGCTTCCGATGGGAGTATTGATACGCTAAAGGTTACACCGTCAGGTCCAGAGGCTGGTGTAAATGCTTCTGATGCTGATTCAAGTGGTTTGGTTAATGCTGCTGATGCTGCTGGCGCTGATATCAATCGTGTGGATGCAAATGGAAACCATCCGGTGGATGTTATGGTTGTTCCACATAAGCTCGAGGTTGTGAAAACAAGTCTTGAAGAACTGCTTTTATCACCTGGGGCTGATATCAGTTGTTCTGTTCCGCTATCTGTTAATTCATCAAGTCCTCATTCTGCTGCGCCTTTATCATCTGCTGAAAATGAATCTCCATCCTCTCCTGTGGCTCCAAAGTTTACCGACACAGCTGTTAATTCTGCATCAGAAAAGAAAGAATATCCAATTGCACTTCCAAGTGTAGAAAGCAGCATGTACGCCACAGATGAATTTCGCATGTATTCGTTTAAGGTTCTTCTTTGTCCTCGTGCATACTCTCATGATTGGACCGAGTGTCCTTTTAAACATCCTCATGAGAATGCTCGAAGGAGAGACCTTAGAAAGTTCACCTACAGCTGTGTACCATGCCCTGATTTTAAAAAAGGGGACTGCAAACGTGCAGATACGTGTGAATTTGCTCATGGACTATTCGAGACATGGCTACACCCAGATCGGTATCGCACAATTCTCTGCAAAGATGGTACTAGTTGTGACCGAAAGGTGTGCTTTTTTGCACACTTAGCTGAAGAGCTGCGTCCAATATATGTCTCCACTGGATCTGCTGTTCCTTTACCCCGATCAGCTGCATCTGCTCCCAATGTCATGGACAATGCTGCTGCAACGAGCCTTTATCGTGGTTTGCTACCAACTCCCTTTGCACTGCCTTTATCTCCATATGCAAATGGCATCTCTCCCTCAAATAATGCTAGGCCAGCTCTTCGCTTACCAGGAAGAAATATGTTCCAAGACATTCATTGTCAGCAGCACATGCTAAATGACTTAAGTTGTTTCTCACAGCCCCGTCCTGGTGCCATTTCAGTGAGTCGGTCTGTTAACTCCTGGTCTAACTGGGGATCTCGTACTAGAAAACCTGATTGGTCCGTTAACGGAAGTGACTTTGGTCGATCGCAGCATGGAAACAATGACGAAGATCCTGATCTATCTTGGGTCCAATCTCTTCTCAACTAA 1191 0.4526 MADSMVDASDGSIDTLKVTPSGPEAGVNASDADSSGLVNAADAAGADINRVDANGNHPVDVMVVPHKLEVVKTSLEELLLSPGADISCSVPLSVNSSSPHSAAPLSSAENESPSSPVAPKFTDTAVNSASEKKEYPIALPSVESSMYATDEFRMYSFKVLLCPRAYSHDWTECPFKHPHENARRRDLRKFTYSCVPCPDFKKGDCKRADTCEFAHGLFETWLHPDRYRTILCKDGTSCDRKVCFFAHLAEELRPIYVSTGSAVPLPRSAASAPNVMDNAAATSLYRGLLPTPFALPLSPYANGISPSNNARPALRLPGRNMFQDIHCQQHMLNDLSCFSQPRPGAISVSRSVNSWSNWGSRTRKPDWSVNGSDFGRSQHGNNDEDPDLSWVQSLLN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g0916 396 MobiDBLite consensus disorder prediction 355 388 - -
Mtr3g0916 396 MobiDBLite consensus disorder prediction 355 377 - -
Mtr3g0916 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 216 IPR000571 GO:0046872
Mtr3g0916 396 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Mtr3g0916 396 PANTHER UNKEMPT FAMILY MEMBER 5 352 IPR045234 -
Mtr3g0916 396 PANTHER UNKEMPT FAMILY MEMBER 351 395 IPR045234 -
Mtr3g0916 396 SMART c3hfinal6 191 217 IPR000571 GO:0046872
Mtr3g0916 396 Gene3D - 191 254 - -
Mtr3g0916 396 MobiDBLite consensus disorder prediction 1 34 - -
Mtr3g0916 396 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 5 352 - -
Mtr3g0916 396 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 351 395 - -
Mtr3g0916 396 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g0916 Mtr-Chr3 13577343 13578533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g0916 5 321 C2H2 Transcription Factor Family AT5G12850 48.718 1.25e-87 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g0916 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g0916 - - mtr:MTR_3g435680 793.497